Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20511 and SM_b22021 are separated by 348 nucleotides SM_b22021 and SM_b20513 are separated by 94 nucleotides
SM_b20511: SM_b20511 - short-chain dehydrogenase, at 533,617 to 534,396
_b20511
SM_b22021: SM_b22021 - hypothetical protein, at 534,745 to 534,999
_b22021
SM_b20513: SM_b20513 - hypothetical protein, at 535,094 to 536,020
_b20513
Position (kb) 534
535 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 533.808 kb on + strand, within SM_b20511 at 533.811 kb on + strand, within SM_b20511 at 533.812 kb on - strand, within SM_b20511 at 533.952 kb on + strand, within SM_b20511 at 534.136 kb on + strand, within SM_b20511 at 534.136 kb on + strand, within SM_b20511 at 534.178 kb on + strand, within SM_b20511 at 534.205 kb on + strand, within SM_b20511 at 534.462 kb on + strand at 534.464 kb on + strand at 534.465 kb on - strand at 534.508 kb on + strand at 534.621 kb on + strand at 534.621 kb on + strand at 534.621 kb on + strand at 534.622 kb on - strand at 534.778 kb on + strand, within SM_b22021 at 534.778 kb on + strand, within SM_b22021 at 534.779 kb on - strand, within SM_b22021 at 534.779 kb on - strand, within SM_b22021 at 534.925 kb on + strand, within SM_b22021 at 534.926 kb on - strand, within SM_b22021 at 534.926 kb on - strand, within SM_b22021 at 534.928 kb on + strand, within SM_b22021 at 534.928 kb on + strand, within SM_b22021 at 534.929 kb on - strand, within SM_b22021 at 535.109 kb on + strand at 535.110 kb on - strand at 535.111 kb on + strand at 535.113 kb on + strand at 535.113 kb on + strand at 535.113 kb on + strand at 535.113 kb on + strand at 535.113 kb on + strand at 535.113 kb on + strand at 535.114 kb on - strand at 535.114 kb on - strand at 535.114 kb on - strand at 535.114 kb on - strand at 535.114 kb on - strand at 535.127 kb on + strand at 535.128 kb on - strand at 535.204 kb on + strand, within SM_b20513 at 535.204 kb on + strand, within SM_b20513 at 535.205 kb on - strand, within SM_b20513 at 535.402 kb on - strand, within SM_b20513 at 535.494 kb on + strand, within SM_b20513 at 535.495 kb on - strand, within SM_b20513 at 535.495 kb on - strand, within SM_b20513 at 535.580 kb on + strand, within SM_b20513 at 535.621 kb on - strand, within SM_b20513 at 535.822 kb on + strand, within SM_b20513 at 535.823 kb on - strand, within SM_b20513 at 535.868 kb on - strand, within SM_b20513 at 535.882 kb on + strand, within SM_b20513 at 535.882 kb on + strand at 535.883 kb on - strand, within SM_b20513 at 535.909 kb on - strand, within SM_b20513 at 535.967 kb on - strand at 535.985 kb on + strand at 535.985 kb on + strand at 535.986 kb on - strand at 535.986 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 533,808 + SM_b20511 0.24 +0.8 533,811 + SM_b20511 0.25 -1.0 533,812 - SM_b20511 0.25 +0.7 533,952 + SM_b20511 0.43 -1.0 534,136 + SM_b20511 0.67 -1.3 534,136 + SM_b20511 0.67 -1.0 534,178 + SM_b20511 0.72 +0.1 534,205 + SM_b20511 0.75 +0.4 534,462 + -2.0 534,464 + -2.7 534,465 - +0.4 534,508 + -0.0 534,621 + -0.3 534,621 + -0.1 534,621 + +0.2 534,622 - -0.1 534,778 + SM_b22021 0.13 -0.6 534,778 + SM_b22021 0.13 -0.6 534,779 - SM_b22021 0.13 -0.6 534,779 - SM_b22021 0.13 +0.5 534,925 + SM_b22021 0.71 -1.2 534,926 - SM_b22021 0.71 +3.0 534,926 - SM_b22021 0.71 -0.4 534,928 + SM_b22021 0.72 -0.5 534,928 + SM_b22021 0.72 -0.2 534,929 - SM_b22021 0.72 -1.1 535,109 + +0.3 535,110 - -1.0 535,111 + -0.2 535,113 + -0.6 535,113 + -1.0 535,113 + -2.6 535,113 + -0.0 535,113 + -1.2 535,113 + +0.4 535,114 - -0.3 535,114 - -0.0 535,114 - +2.0 535,114 - +0.1 535,114 - +0.2 535,127 + +0.9 535,128 - -0.1 535,204 + SM_b20513 0.12 -0.0 535,204 + SM_b20513 0.12 +0.0 535,205 - SM_b20513 0.12 +0.0 535,402 - SM_b20513 0.33 +0.3 535,494 + SM_b20513 0.43 +0.1 535,495 - SM_b20513 0.43 -0.6 535,495 - SM_b20513 0.43 +4.4 535,580 + SM_b20513 0.52 +0.9 535,621 - SM_b20513 0.57 +0.2 535,822 + SM_b20513 0.79 -1.0 535,823 - SM_b20513 0.79 +0.4 535,868 - SM_b20513 0.83 -0.0 535,882 + SM_b20513 0.85 +0.4 535,882 + +0.2 535,883 - SM_b20513 0.85 -0.2 535,909 - SM_b20513 0.88 +1.4 535,967 - +0.8 535,985 + -0.4 535,985 + +0.3 535,986 - +0.8 535,986 - +0.9
Or see this region's nucleotide sequence