Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21503

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21502 and SM_b21503 are separated by 231 nucleotidesSM_b21503 and SM_b21504 are separated by 10 nucleotidesSM_b21504 and SM_b21505 overlap by 8 nucleotides SM_b21502: SM_b21502 - glycosyltransferase, at 1,426,473 to 1,427,642 _b21502 SM_b21503: SM_b21503 - glycosyltransferase, at 1,427,874 to 1,429,217 _b21503 SM_b21504: SM_b21504 - hypothetical protein, at 1,429,228 to 1,429,983 _b21504 SM_b21505: SM_b21505 - membrane protein, Wzy-like polysaccharide polymerase ExoQ, at 1,429,976 to 1,431,307 _b21505 Position (kb) 1427 1428 1429 1430Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1426.936 kb on + strand, within SM_b21502at 1426.937 kb on - strand, within SM_b21502at 1426.937 kb on - strand, within SM_b21502at 1426.996 kb on + strand, within SM_b21502at 1426.996 kb on + strand, within SM_b21502at 1426.997 kb on - strand, within SM_b21502at 1426.997 kb on - strand, within SM_b21502at 1427.016 kb on + strand, within SM_b21502at 1427.095 kb on + strand, within SM_b21502at 1427.095 kb on + strand, within SM_b21502at 1427.221 kb on + strand, within SM_b21502at 1427.221 kb on + strand, within SM_b21502at 1427.278 kb on - strand, within SM_b21502at 1427.338 kb on + strand, within SM_b21502at 1427.338 kb on + strand, within SM_b21502at 1427.339 kb on - strand, within SM_b21502at 1427.343 kb on + strand, within SM_b21502at 1427.343 kb on + strand, within SM_b21502at 1427.343 kb on + strand, within SM_b21502at 1427.343 kb on + strand, within SM_b21502at 1427.343 kb on + strand, within SM_b21502at 1427.343 kb on + strand, within SM_b21502at 1427.344 kb on - strand, within SM_b21502at 1427.344 kb on - strand, within SM_b21502at 1427.344 kb on - strand, within SM_b21502at 1427.357 kb on + strand, within SM_b21502at 1427.358 kb on - strand, within SM_b21502at 1427.358 kb on - strand, within SM_b21502at 1427.384 kb on + strand, within SM_b21502at 1427.384 kb on + strand, within SM_b21502at 1427.384 kb on + strand, within SM_b21502at 1427.384 kb on + strand, within SM_b21502at 1427.385 kb on - strand, within SM_b21502at 1427.385 kb on - strand, within SM_b21502at 1427.385 kb on - strand, within SM_b21502at 1427.385 kb on - strand, within SM_b21502at 1427.385 kb on - strand, within SM_b21502at 1427.385 kb on - strand, within SM_b21502at 1427.742 kb on - strandat 1428.011 kb on + strand, within SM_b21503at 1428.278 kb on - strand, within SM_b21503at 1428.511 kb on + strand, within SM_b21503at 1428.616 kb on + strand, within SM_b21503at 1428.752 kb on - strand, within SM_b21503at 1428.781 kb on - strand, within SM_b21503at 1428.901 kb on + strand, within SM_b21503at 1428.901 kb on + strand, within SM_b21503at 1429.034 kb on - strand, within SM_b21503at 1429.034 kb on - strand, within SM_b21503at 1429.139 kb on + strandat 1429.139 kb on + strandat 1429.139 kb on + strandat 1429.140 kb on - strandat 1429.183 kb on + strandat 1429.183 kb on + strandat 1429.183 kb on + strandat 1429.184 kb on - strandat 1429.229 kb on + strandat 1429.292 kb on + strandat 1429.293 kb on - strandat 1429.331 kb on + strand, within SM_b21504at 1429.332 kb on - strand, within SM_b21504at 1429.332 kb on - strand, within SM_b21504at 1429.566 kb on - strand, within SM_b21504at 1429.784 kb on - strand, within SM_b21504at 1429.784 kb on - strand, within SM_b21504at 1429.784 kb on - strand, within SM_b21504at 1429.785 kb on + strand, within SM_b21504at 1429.787 kb on + strand, within SM_b21504at 1429.787 kb on + strand, within SM_b21504at 1429.787 kb on + strand, within SM_b21504at 1429.787 kb on + strand, within SM_b21504at 1429.787 kb on + strand, within SM_b21504at 1429.788 kb on - strand, within SM_b21504at 1429.788 kb on - strand, within SM_b21504at 1429.788 kb on - strand, within SM_b21504at 1429.788 kb on - strand, within SM_b21504at 1429.788 kb on - strand, within SM_b21504at 1429.788 kb on - strand, within SM_b21504at 1429.808 kb on + strand, within SM_b21504at 1429.808 kb on + strand, within SM_b21504at 1429.809 kb on - strand, within SM_b21504at 1429.809 kb on - strand, within SM_b21504at 1429.809 kb on - strand, within SM_b21504at 1429.988 kb on + strandat 1430.055 kb on + strandat 1430.056 kb on - strandat 1430.056 kb on - strandat 1430.137 kb on - strand, within SM_b21505at 1430.145 kb on - strand, within SM_b21505at 1430.150 kb on + strand, within SM_b21505at 1430.151 kb on - strand, within SM_b21505

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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1,426,936 + SM_b21502 0.40 +0.5
1,426,937 - SM_b21502 0.40 +1.2
1,426,937 - SM_b21502 0.40 +1.0
1,426,996 + SM_b21502 0.45 -0.1
1,426,996 + SM_b21502 0.45 +0.1
1,426,997 - SM_b21502 0.45 +0.7
1,426,997 - SM_b21502 0.45 +0.7
1,427,016 + SM_b21502 0.46 +0.7
1,427,095 + SM_b21502 0.53 +0.5
1,427,095 + SM_b21502 0.53 +0.4
1,427,221 + SM_b21502 0.64 -1.3
1,427,221 + SM_b21502 0.64 +0.4
1,427,278 - SM_b21502 0.69 +0.1
1,427,338 + SM_b21502 0.74 +0.7
1,427,338 + SM_b21502 0.74 +0.5
1,427,339 - SM_b21502 0.74 -0.4
1,427,343 + SM_b21502 0.74 +0.2
1,427,343 + SM_b21502 0.74 +0.4
1,427,343 + SM_b21502 0.74 -0.9
1,427,343 + SM_b21502 0.74 +0.2
1,427,343 + SM_b21502 0.74 -1.7
1,427,343 + SM_b21502 0.74 +0.2
1,427,344 - SM_b21502 0.74 +0.8
1,427,344 - SM_b21502 0.74 +1.0
1,427,344 - SM_b21502 0.74 +0.3
1,427,357 + SM_b21502 0.76 +2.0
1,427,358 - SM_b21502 0.76 -0.9
1,427,358 - SM_b21502 0.76 +0.4
1,427,384 + SM_b21502 0.78 -0.3
1,427,384 + SM_b21502 0.78 +1.2
1,427,384 + SM_b21502 0.78 -0.8
1,427,384 + SM_b21502 0.78 +0.5
1,427,385 - SM_b21502 0.78 +0.6
1,427,385 - SM_b21502 0.78 +0.1
1,427,385 - SM_b21502 0.78 +0.5
1,427,385 - SM_b21502 0.78 -1.3
1,427,385 - SM_b21502 0.78 +0.2
1,427,385 - SM_b21502 0.78 -0.5
1,427,742 - +0.1
1,428,011 + SM_b21503 0.10 +0.7
1,428,278 - SM_b21503 0.30 +0.2
1,428,511 + SM_b21503 0.47 +1.5
1,428,616 + SM_b21503 0.55 -1.2
1,428,752 - SM_b21503 0.65 +0.2
1,428,781 - SM_b21503 0.67 -1.9
1,428,901 + SM_b21503 0.76 +0.9
1,428,901 + SM_b21503 0.76 +0.5
1,429,034 - SM_b21503 0.86 +0.9
1,429,034 - SM_b21503 0.86 +1.8
1,429,139 + -1.4
1,429,139 + -1.5
1,429,139 + +0.5
1,429,140 - +2.0
1,429,183 + +0.2
1,429,183 + +1.7
1,429,183 + +0.9
1,429,184 - +1.2
1,429,229 + -1.2
1,429,292 + +0.4
1,429,293 - -0.5
1,429,331 + SM_b21504 0.14 +1.3
1,429,332 - SM_b21504 0.14 -3.3
1,429,332 - SM_b21504 0.14 +1.4
1,429,566 - SM_b21504 0.45 -0.3
1,429,784 - SM_b21504 0.74 -0.7
1,429,784 - SM_b21504 0.74 -0.4
1,429,784 - SM_b21504 0.74 +0.7
1,429,785 + SM_b21504 0.74 +0.5
1,429,787 + SM_b21504 0.74 +0.3
1,429,787 + SM_b21504 0.74 +0.8
1,429,787 + SM_b21504 0.74 +1.9
1,429,787 + SM_b21504 0.74 +1.2
1,429,787 + SM_b21504 0.74 +0.7
1,429,788 - SM_b21504 0.74 +0.4
1,429,788 - SM_b21504 0.74 -0.8
1,429,788 - SM_b21504 0.74 -0.7
1,429,788 - SM_b21504 0.74 -1.4
1,429,788 - SM_b21504 0.74 -0.1
1,429,788 - SM_b21504 0.74 -0.8
1,429,808 + SM_b21504 0.77 -0.0
1,429,808 + SM_b21504 0.77 -0.9
1,429,809 - SM_b21504 0.77 +0.1
1,429,809 - SM_b21504 0.77 -1.6
1,429,809 - SM_b21504 0.77 -1.3
1,429,988 + +0.6
1,430,055 + -0.7
1,430,056 - +0.5
1,430,056 - -1.1
1,430,137 - SM_b21505 0.12 -1.1
1,430,145 - SM_b21505 0.13 -1.7
1,430,150 + SM_b21505 0.13 -1.1
1,430,151 - SM_b21505 0.13 -0.4

Or see this region's nucleotide sequence