Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21461 and SM_b21462 are separated by 35 nucleotides SM_b21462 and SM_b21463 overlap by 10 nucleotides SM_b21463 and SM_b21464 are separated by 213 nucleotides
SM_b21461: SM_b21461 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,387,351 to 1,388,613
_b21461
SM_b21462: SM_b21462 - sugar kinase, at 1,388,649 to 1,389,584
_b21462
SM_b21463: SM_b21463 - glycosyl hydrolase, 6-phospho-beta-glucosidase, at 1,389,575 to 1,390,960
_b21463
SM_b21464: SM_b21464 - GntR family transcriptional regulator, at 1,391,174 to 1,391,947
_b21464
Position (kb)
1389
1390
1391 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1388.604 kb on + strand at 1388.604 kb on + strand at 1388.604 kb on + strand at 1388.605 kb on - strand at 1388.605 kb on - strand at 1388.605 kb on - strand at 1388.605 kb on - strand at 1388.651 kb on - strand at 1388.651 kb on - strand at 1388.651 kb on - strand at 1388.653 kb on - strand at 1388.653 kb on - strand at 1388.675 kb on - strand at 1388.717 kb on - strand at 1388.835 kb on - strand, within SM_b21462 at 1388.916 kb on - strand, within SM_b21462 at 1389.090 kb on + strand, within SM_b21462 at 1389.091 kb on - strand, within SM_b21462 at 1389.091 kb on - strand, within SM_b21462 at 1389.168 kb on + strand, within SM_b21462 at 1389.169 kb on - strand, within SM_b21462 at 1389.229 kb on + strand, within SM_b21462 at 1389.363 kb on - strand, within SM_b21462 at 1389.523 kb on + strand at 1389.526 kb on + strand at 1389.527 kb on - strand at 1389.527 kb on - strand at 1389.615 kb on + strand at 1389.616 kb on - strand at 1389.892 kb on - strand, within SM_b21463 at 1389.892 kb on - strand, within SM_b21463 at 1389.945 kb on + strand, within SM_b21463 at 1389.946 kb on - strand, within SM_b21463 at 1390.035 kb on + strand, within SM_b21463 at 1390.036 kb on - strand, within SM_b21463 at 1390.042 kb on + strand, within SM_b21463 at 1390.044 kb on + strand, within SM_b21463 at 1390.044 kb on + strand, within SM_b21463 at 1390.044 kb on + strand, within SM_b21463 at 1390.044 kb on + strand, within SM_b21463 at 1390.044 kb on + strand, within SM_b21463 at 1390.045 kb on - strand, within SM_b21463 at 1390.045 kb on - strand, within SM_b21463 at 1390.045 kb on - strand, within SM_b21463 at 1390.045 kb on - strand, within SM_b21463 at 1390.045 kb on - strand, within SM_b21463 at 1390.045 kb on - strand, within SM_b21463 at 1390.045 kb on - strand, within SM_b21463 at 1390.045 kb on - strand, within SM_b21463 at 1390.045 kb on - strand, within SM_b21463 at 1390.045 kb on - strand, within SM_b21463 at 1390.045 kb on - strand, within SM_b21463 at 1390.045 kb on - strand, within SM_b21463 at 1390.078 kb on + strand, within SM_b21463 at 1390.078 kb on + strand, within SM_b21463 at 1390.215 kb on + strand, within SM_b21463 at 1390.218 kb on + strand, within SM_b21463 at 1390.218 kb on + strand, within SM_b21463 at 1390.219 kb on - strand, within SM_b21463 at 1390.221 kb on + strand, within SM_b21463 at 1390.221 kb on + strand, within SM_b21463 at 1390.221 kb on + strand, within SM_b21463 at 1390.221 kb on + strand, within SM_b21463 at 1390.222 kb on - strand, within SM_b21463 at 1390.224 kb on + strand, within SM_b21463 at 1390.224 kb on + strand, within SM_b21463 at 1390.224 kb on + strand, within SM_b21463 at 1390.224 kb on + strand, within SM_b21463 at 1390.225 kb on - strand, within SM_b21463 at 1390.225 kb on - strand, within SM_b21463 at 1390.227 kb on + strand, within SM_b21463 at 1390.228 kb on - strand, within SM_b21463 at 1390.228 kb on - strand, within SM_b21463 at 1390.234 kb on - strand, within SM_b21463 at 1390.234 kb on - strand, within SM_b21463 at 1390.366 kb on + strand, within SM_b21463 at 1390.367 kb on - strand, within SM_b21463 at 1390.389 kb on + strand, within SM_b21463 at 1390.390 kb on - strand, within SM_b21463 at 1390.489 kb on - strand, within SM_b21463 at 1390.584 kb on + strand, within SM_b21463 at 1390.690 kb on + strand, within SM_b21463 at 1390.691 kb on - strand, within SM_b21463 at 1390.732 kb on - strand, within SM_b21463 at 1390.817 kb on + strand, within SM_b21463 at 1390.817 kb on + strand, within SM_b21463 at 1390.817 kb on + strand, within SM_b21463 at 1390.818 kb on - strand, within SM_b21463 at 1390.818 kb on - strand, within SM_b21463 at 1390.819 kb on + strand, within SM_b21463 at 1390.819 kb on + strand, within SM_b21463 at 1390.965 kb on + strand at 1391.237 kb on + strand at 1391.299 kb on + strand, within SM_b21464 at 1391.300 kb on - strand, within SM_b21464 at 1391.333 kb on + strand, within SM_b21464 at 1391.420 kb on + strand, within SM_b21464 at 1391.421 kb on - strand, within SM_b21464 at 1391.421 kb on - strand, within SM_b21464 at 1391.470 kb on + strand, within SM_b21464 at 1391.622 kb on + strand, within SM_b21464 at 1391.712 kb on - strand, within SM_b21464 at 1391.733 kb on - strand, within SM_b21464 at 1391.778 kb on + strand, within SM_b21464 at 1391.779 kb on - strand, within SM_b21464 at 1391.945 kb on + strand at 1391.945 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 1,388,604 + -0.1 1,388,604 + +0.7 1,388,604 + -0.6 1,388,605 - +2.4 1,388,605 - -0.0 1,388,605 - +0.1 1,388,605 - +0.5 1,388,651 - -0.6 1,388,651 - -0.8 1,388,651 - -0.5 1,388,653 - -0.9 1,388,653 - -0.0 1,388,675 - -0.7 1,388,717 - -0.2 1,388,835 - SM_b21462 0.20 -0.5 1,388,916 - SM_b21462 0.29 -1.0 1,389,090 + SM_b21462 0.47 +0.2 1,389,091 - SM_b21462 0.47 +1.8 1,389,091 - SM_b21462 0.47 +0.2 1,389,168 + SM_b21462 0.55 -0.1 1,389,169 - SM_b21462 0.56 +0.8 1,389,229 + SM_b21462 0.62 -0.2 1,389,363 - SM_b21462 0.76 -0.8 1,389,523 + +0.6 1,389,526 + -0.1 1,389,527 - -0.8 1,389,527 - -0.2 1,389,615 + +0.9 1,389,616 - -0.1 1,389,892 - SM_b21463 0.23 +0.6 1,389,892 - SM_b21463 0.23 -1.0 1,389,945 + SM_b21463 0.27 +0.8 1,389,946 - SM_b21463 0.27 -0.3 1,390,035 + SM_b21463 0.33 -0.5 1,390,036 - SM_b21463 0.33 +1.9 1,390,042 + SM_b21463 0.34 +0.8 1,390,044 + SM_b21463 0.34 -0.1 1,390,044 + SM_b21463 0.34 -1.6 1,390,044 + SM_b21463 0.34 -0.6 1,390,044 + SM_b21463 0.34 -0.6 1,390,044 + SM_b21463 0.34 -0.5 1,390,045 - SM_b21463 0.34 +0.1 1,390,045 - SM_b21463 0.34 -0.1 1,390,045 - SM_b21463 0.34 +1.2 1,390,045 - SM_b21463 0.34 -1.8 1,390,045 - SM_b21463 0.34 -0.6 1,390,045 - SM_b21463 0.34 -1.8 1,390,045 - SM_b21463 0.34 -0.3 1,390,045 - SM_b21463 0.34 -0.0 1,390,045 - SM_b21463 0.34 -1.1 1,390,045 - SM_b21463 0.34 +0.2 1,390,045 - SM_b21463 0.34 -0.1 1,390,045 - SM_b21463 0.34 -0.2 1,390,078 + SM_b21463 0.36 -0.4 1,390,078 + SM_b21463 0.36 +0.0 1,390,215 + SM_b21463 0.46 -0.9 1,390,218 + SM_b21463 0.46 -1.5 1,390,218 + SM_b21463 0.46 +1.5 1,390,219 - SM_b21463 0.46 -0.0 1,390,221 + SM_b21463 0.47 +0.2 1,390,221 + SM_b21463 0.47 +2.0 1,390,221 + SM_b21463 0.47 -0.3 1,390,221 + SM_b21463 0.47 -0.1 1,390,222 - SM_b21463 0.47 -0.1 1,390,224 + SM_b21463 0.47 -0.3 1,390,224 + SM_b21463 0.47 +0.1 1,390,224 + SM_b21463 0.47 -0.0 1,390,224 + SM_b21463 0.47 +0.4 1,390,225 - SM_b21463 0.47 -2.5 1,390,225 - SM_b21463 0.47 +1.2 1,390,227 + SM_b21463 0.47 -0.0 1,390,228 - SM_b21463 0.47 -0.7 1,390,228 - SM_b21463 0.47 +0.6 1,390,234 - SM_b21463 0.48 +0.5 1,390,234 - SM_b21463 0.48 -1.0 1,390,366 + SM_b21463 0.57 -0.2 1,390,367 - SM_b21463 0.57 -0.5 1,390,389 + SM_b21463 0.59 -0.4 1,390,390 - SM_b21463 0.59 +0.1 1,390,489 - SM_b21463 0.66 -0.7 1,390,584 + SM_b21463 0.73 +0.0 1,390,690 + SM_b21463 0.80 +0.5 1,390,691 - SM_b21463 0.81 -0.1 1,390,732 - SM_b21463 0.83 +0.4 1,390,817 + SM_b21463 0.90 -0.0 1,390,817 + SM_b21463 0.90 -1.1 1,390,817 + SM_b21463 0.90 -1.2 1,390,818 - SM_b21463 0.90 -0.4 1,390,818 - SM_b21463 0.90 -0.3 1,390,819 + SM_b21463 0.90 -0.2 1,390,819 + SM_b21463 0.90 -0.8 1,390,965 + +0.1 1,391,237 + +0.1 1,391,299 + SM_b21464 0.16 +0.8 1,391,300 - SM_b21464 0.16 +0.8 1,391,333 + SM_b21464 0.21 +1.0 1,391,420 + SM_b21464 0.32 +0.2 1,391,421 - SM_b21464 0.32 +0.2 1,391,421 - SM_b21464 0.32 +0.5 1,391,470 + SM_b21464 0.38 -0.9 1,391,622 + SM_b21464 0.58 -0.8 1,391,712 - SM_b21464 0.70 -1.0 1,391,733 - SM_b21464 0.72 +0.9 1,391,778 + SM_b21464 0.78 -0.5 1,391,779 - SM_b21464 0.78 -0.1 1,391,945 + +0.0 1,391,945 + +0.0
Or see this region's nucleotide sequence