Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21458 and SM_b21459 are separated by 11 nucleotides SM_b21459 and SM_b21460 overlap by 4 nucleotides SM_b21460 and SM_b21461 are separated by 88 nucleotides
SM_b21458: SM_b21458 - sugar uptake ABC transporter permease, at 1,384,373 to 1,385,248
_b21458
SM_b21459: SM_b21459 - sugar uptake ABC transporter permease, at 1,385,260 to 1,386,153
_b21459
SM_b21460: SM_b21460 - sugar uptake ABC transporter ATP-binding protein, at 1,386,150 to 1,387,262
_b21460
SM_b21461: SM_b21461 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,387,351 to 1,388,613
_b21461
Position (kb)
1386
1387
1388 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1385.183 kb on + strand at 1385.183 kb on + strand at 1385.203 kb on - strand at 1385.394 kb on - strand, within SM_b21459 at 1385.438 kb on + strand, within SM_b21459 at 1385.439 kb on - strand, within SM_b21459 at 1385.521 kb on + strand, within SM_b21459 at 1385.906 kb on - strand, within SM_b21459 at 1386.103 kb on + strand at 1386.104 kb on - strand at 1386.104 kb on - strand at 1386.223 kb on + strand at 1386.223 kb on + strand at 1386.224 kb on - strand at 1386.270 kb on + strand, within SM_b21460 at 1386.270 kb on + strand, within SM_b21460 at 1386.271 kb on - strand, within SM_b21460 at 1386.271 kb on - strand, within SM_b21460 at 1386.271 kb on - strand, within SM_b21460 at 1386.271 kb on - strand, within SM_b21460 at 1386.331 kb on + strand, within SM_b21460 at 1386.331 kb on + strand, within SM_b21460 at 1386.332 kb on - strand, within SM_b21460 at 1386.340 kb on + strand, within SM_b21460 at 1386.340 kb on + strand, within SM_b21460 at 1386.340 kb on + strand, within SM_b21460 at 1386.340 kb on + strand, within SM_b21460 at 1386.340 kb on + strand, within SM_b21460 at 1386.341 kb on - strand at 1386.341 kb on - strand, within SM_b21460 at 1386.341 kb on - strand, within SM_b21460 at 1386.341 kb on - strand, within SM_b21460 at 1386.341 kb on - strand, within SM_b21460 at 1386.341 kb on - strand, within SM_b21460 at 1386.347 kb on - strand, within SM_b21460 at 1386.347 kb on - strand, within SM_b21460 at 1386.467 kb on - strand, within SM_b21460 at 1386.509 kb on + strand, within SM_b21460 at 1386.509 kb on + strand, within SM_b21460 at 1386.551 kb on + strand, within SM_b21460 at 1386.551 kb on + strand, within SM_b21460 at 1386.552 kb on - strand, within SM_b21460 at 1386.552 kb on - strand, within SM_b21460 at 1386.552 kb on - strand, within SM_b21460 at 1386.599 kb on - strand at 1386.599 kb on - strand, within SM_b21460 at 1386.697 kb on + strand, within SM_b21460 at 1386.697 kb on + strand, within SM_b21460 at 1386.697 kb on + strand, within SM_b21460 at 1386.697 kb on + strand, within SM_b21460 at 1386.697 kb on + strand, within SM_b21460 at 1386.698 kb on - strand, within SM_b21460 at 1386.698 kb on - strand, within SM_b21460 at 1386.698 kb on - strand, within SM_b21460 at 1386.698 kb on - strand, within SM_b21460 at 1386.995 kb on + strand, within SM_b21460 at 1387.216 kb on + strand at 1387.217 kb on - strand at 1387.217 kb on - strand at 1387.217 kb on - strand at 1387.471 kb on - strand at 1387.472 kb on + strand at 1387.472 kb on + strand at 1387.473 kb on - strand at 1387.473 kb on - strand at 1387.473 kb on - strand at 1387.473 kb on - strand at 1387.473 kb on - strand at 1387.575 kb on - strand, within SM_b21461 at 1387.575 kb on - strand, within SM_b21461 at 1387.644 kb on + strand, within SM_b21461 at 1387.646 kb on + strand, within SM_b21461 at 1387.647 kb on - strand, within SM_b21461 at 1387.647 kb on - strand, within SM_b21461 at 1387.647 kb on - strand, within SM_b21461 at 1387.647 kb on - strand, within SM_b21461 at 1387.703 kb on + strand, within SM_b21461 at 1387.774 kb on - strand, within SM_b21461 at 1387.774 kb on - strand, within SM_b21461 at 1387.818 kb on - strand, within SM_b21461 at 1387.818 kb on - strand, within SM_b21461 at 1387.846 kb on - strand, within SM_b21461 at 1387.883 kb on + strand, within SM_b21461 at 1387.883 kb on + strand, within SM_b21461 at 1387.884 kb on - strand, within SM_b21461 at 1388.048 kb on + strand, within SM_b21461 at 1388.049 kb on - strand, within SM_b21461 at 1388.070 kb on - strand, within SM_b21461 at 1388.169 kb on - strand, within SM_b21461 at 1388.192 kb on + strand, within SM_b21461 at 1388.193 kb on - strand, within SM_b21461 at 1388.216 kb on + strand, within SM_b21461 at 1388.216 kb on + strand, within SM_b21461 at 1388.216 kb on + strand, within SM_b21461 at 1388.217 kb on - strand, within SM_b21461 at 1388.217 kb on - strand, within SM_b21461
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 1,385,183 + -0.1 1,385,183 + -0.5 1,385,203 - +0.8 1,385,394 - SM_b21459 0.15 -0.9 1,385,438 + SM_b21459 0.20 -0.4 1,385,439 - SM_b21459 0.20 -0.4 1,385,521 + SM_b21459 0.29 -1.0 1,385,906 - SM_b21459 0.72 +0.3 1,386,103 + -0.5 1,386,104 - +0.4 1,386,104 - +0.5 1,386,223 + +0.2 1,386,223 + -1.0 1,386,224 - +0.0 1,386,270 + SM_b21460 0.11 +0.7 1,386,270 + SM_b21460 0.11 -0.1 1,386,271 - SM_b21460 0.11 -1.2 1,386,271 - SM_b21460 0.11 +0.1 1,386,271 - SM_b21460 0.11 +0.6 1,386,271 - SM_b21460 0.11 +0.0 1,386,331 + SM_b21460 0.16 +0.3 1,386,331 + SM_b21460 0.16 -0.9 1,386,332 - SM_b21460 0.16 -1.6 1,386,340 + SM_b21460 0.17 +0.1 1,386,340 + SM_b21460 0.17 +0.1 1,386,340 + SM_b21460 0.17 +0.3 1,386,340 + SM_b21460 0.17 +0.4 1,386,340 + SM_b21460 0.17 -0.0 1,386,341 - +0.6 1,386,341 - SM_b21460 0.17 -2.2 1,386,341 - SM_b21460 0.17 -1.0 1,386,341 - SM_b21460 0.17 -0.4 1,386,341 - SM_b21460 0.17 -1.5 1,386,341 - SM_b21460 0.17 +0.3 1,386,347 - SM_b21460 0.18 -0.2 1,386,347 - SM_b21460 0.18 -0.6 1,386,467 - SM_b21460 0.28 +0.0 1,386,509 + SM_b21460 0.32 +1.1 1,386,509 + SM_b21460 0.32 -0.1 1,386,551 + SM_b21460 0.36 +0.2 1,386,551 + SM_b21460 0.36 -0.5 1,386,552 - SM_b21460 0.36 -1.7 1,386,552 - SM_b21460 0.36 -1.1 1,386,552 - SM_b21460 0.36 -0.8 1,386,599 - +1.9 1,386,599 - SM_b21460 0.40 +0.3 1,386,697 + SM_b21460 0.49 -0.3 1,386,697 + SM_b21460 0.49 -1.2 1,386,697 + SM_b21460 0.49 -2.2 1,386,697 + SM_b21460 0.49 -0.1 1,386,697 + SM_b21460 0.49 -1.0 1,386,698 - SM_b21460 0.49 -1.2 1,386,698 - SM_b21460 0.49 +0.6 1,386,698 - SM_b21460 0.49 +0.2 1,386,698 - SM_b21460 0.49 -1.0 1,386,995 + SM_b21460 0.76 -2.0 1,387,216 + +0.4 1,387,217 - -0.9 1,387,217 - -1.1 1,387,217 - +0.9 1,387,471 - -0.7 1,387,472 + +0.3 1,387,472 + -0.2 1,387,473 - -0.5 1,387,473 - +0.7 1,387,473 - -0.2 1,387,473 - -0.4 1,387,473 - -2.3 1,387,575 - SM_b21461 0.18 +0.2 1,387,575 - SM_b21461 0.18 -0.6 1,387,644 + SM_b21461 0.23 +0.3 1,387,646 + SM_b21461 0.23 +0.3 1,387,647 - SM_b21461 0.23 -0.0 1,387,647 - SM_b21461 0.23 +0.0 1,387,647 - SM_b21461 0.23 -0.2 1,387,647 - SM_b21461 0.23 +0.7 1,387,703 + SM_b21461 0.28 -0.1 1,387,774 - SM_b21461 0.33 -0.6 1,387,774 - SM_b21461 0.33 +1.9 1,387,818 - SM_b21461 0.37 +1.6 1,387,818 - SM_b21461 0.37 -0.1 1,387,846 - SM_b21461 0.39 +0.9 1,387,883 + SM_b21461 0.42 +0.3 1,387,883 + SM_b21461 0.42 -0.4 1,387,884 - SM_b21461 0.42 -0.5 1,388,048 + SM_b21461 0.55 +0.5 1,388,049 - SM_b21461 0.55 -0.0 1,388,070 - SM_b21461 0.57 +0.3 1,388,169 - SM_b21461 0.65 +0.4 1,388,192 + SM_b21461 0.67 -0.5 1,388,193 - SM_b21461 0.67 -0.7 1,388,216 + SM_b21461 0.68 +0.3 1,388,216 + SM_b21461 0.68 -1.2 1,388,216 + SM_b21461 0.68 +1.4 1,388,217 - SM_b21461 0.69 +1.2 1,388,217 - SM_b21461 0.69 +0.9
Or see this region's nucleotide sequence