Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21357 and SM_b21358 are separated by 52 nucleotides SM_b21358 and SM_b21359 are separated by 141 nucleotides SM_b21359 and SM_b21360 overlap by 134 nucleotides SM_b21360 and SM_b21361 are separated by 65 nucleotides SM_b21361 and SM_b21362 are separated by 123 nucleotides
SM_b21357: SM_b21357 - hypothetical protein, at 1,023,267 to 1,023,785
_b21357
SM_b21358: SM_b21358 - hypothetical protein, at 1,023,838 to 1,024,332
_b21358
SM_b21359: SM_b21359 - LysR family transcriptional regulator, at 1,024,474 to 1,024,932
_b21359
SM_b21360: SM_b21360 - LysR family transcriptional regulator, at 1,024,799 to 1,024,981
_b21360
SM_b21361: SM_b21361 - hypothetical protein, at 1,025,047 to 1,025,547
_b21361
SM_b21362: SM_b21362 - hypothetical protein, at 1,025,671 to 1,026,111
_b21362
Position (kb)
1024
1025 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1023.637 kb on + strand, within SM_b21357 at 1023.637 kb on + strand, within SM_b21357 at 1023.638 kb on - strand, within SM_b21357 at 1023.700 kb on - strand, within SM_b21357 at 1023.783 kb on + strand at 1023.783 kb on + strand at 1023.783 kb on + strand at 1023.844 kb on + strand at 1023.859 kb on + strand at 1023.860 kb on - strand at 1024.046 kb on + strand, within SM_b21358 at 1024.046 kb on + strand, within SM_b21358 at 1024.046 kb on + strand, within SM_b21358 at 1024.046 kb on + strand, within SM_b21358 at 1024.046 kb on + strand, within SM_b21358 at 1024.047 kb on - strand, within SM_b21358 at 1024.047 kb on - strand at 1024.047 kb on - strand, within SM_b21358 at 1024.231 kb on - strand, within SM_b21358 at 1024.345 kb on - strand at 1024.453 kb on + strand at 1024.453 kb on + strand at 1024.461 kb on + strand at 1024.462 kb on - strand at 1024.467 kb on + strand at 1024.468 kb on - strand at 1024.468 kb on - strand at 1024.496 kb on - strand at 1024.496 kb on - strand at 1024.496 kb on - strand at 1024.498 kb on + strand at 1024.498 kb on + strand at 1024.499 kb on - strand at 1024.499 kb on - strand at 1024.499 kb on - strand at 1024.528 kb on + strand, within SM_b21359 at 1024.529 kb on - strand, within SM_b21359 at 1024.619 kb on + strand, within SM_b21359 at 1024.620 kb on - strand, within SM_b21359 at 1024.667 kb on - strand, within SM_b21359 at 1025.021 kb on - strand at 1025.021 kb on - strand at 1025.123 kb on + strand, within SM_b21361 at 1025.124 kb on - strand, within SM_b21361 at 1025.124 kb on - strand, within SM_b21361 at 1025.408 kb on + strand, within SM_b21361 at 1025.409 kb on - strand, within SM_b21361 at 1025.409 kb on - strand, within SM_b21361 at 1025.409 kb on - strand, within SM_b21361 at 1025.409 kb on - strand, within SM_b21361 at 1025.409 kb on - strand, within SM_b21361 at 1025.495 kb on + strand, within SM_b21361 at 1025.595 kb on + strand at 1025.665 kb on + strand at 1025.665 kb on + strand at 1025.665 kb on + strand at 1025.666 kb on - strand at 1025.694 kb on + strand at 1025.695 kb on - strand at 1025.702 kb on - strand at 1025.702 kb on - strand at 1025.706 kb on + strand at 1025.891 kb on - strand, within SM_b21362
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 1,023,637 + SM_b21357 0.71 -1.3 1,023,637 + SM_b21357 0.71 +0.1 1,023,638 - SM_b21357 0.71 +0.0 1,023,700 - SM_b21357 0.83 +0.2 1,023,783 + -0.1 1,023,783 + +0.6 1,023,783 + -1.2 1,023,844 + +0.1 1,023,859 + -0.6 1,023,860 - -0.4 1,024,046 + SM_b21358 0.42 +0.4 1,024,046 + SM_b21358 0.42 +0.1 1,024,046 + SM_b21358 0.42 +0.2 1,024,046 + SM_b21358 0.42 -0.3 1,024,046 + SM_b21358 0.42 -0.1 1,024,047 - SM_b21358 0.42 +0.6 1,024,047 - -0.8 1,024,047 - SM_b21358 0.42 -0.2 1,024,231 - SM_b21358 0.79 -0.6 1,024,345 - +0.2 1,024,453 + +2.1 1,024,453 + +0.2 1,024,461 + -0.5 1,024,462 - -0.5 1,024,467 + -0.8 1,024,468 - +0.8 1,024,468 - -0.7 1,024,496 - +0.6 1,024,496 - -0.0 1,024,496 - -0.4 1,024,498 + -0.1 1,024,498 + +0.4 1,024,499 - +0.3 1,024,499 - +0.5 1,024,499 - -0.2 1,024,528 + SM_b21359 0.12 +1.1 1,024,529 - SM_b21359 0.12 -0.4 1,024,619 + SM_b21359 0.32 -1.5 1,024,620 - SM_b21359 0.32 +0.8 1,024,667 - SM_b21359 0.42 -0.8 1,025,021 - -0.9 1,025,021 - +0.1 1,025,123 + SM_b21361 0.15 +0.1 1,025,124 - SM_b21361 0.15 -0.8 1,025,124 - SM_b21361 0.15 +0.1 1,025,408 + SM_b21361 0.72 -0.0 1,025,409 - SM_b21361 0.72 -1.2 1,025,409 - SM_b21361 0.72 -0.5 1,025,409 - SM_b21361 0.72 -0.0 1,025,409 - SM_b21361 0.72 +0.2 1,025,409 - SM_b21361 0.72 -0.6 1,025,495 + SM_b21361 0.89 +1.1 1,025,595 + +0.9 1,025,665 + -0.3 1,025,665 + +0.1 1,025,665 + +0.3 1,025,666 - +0.3 1,025,694 + -0.4 1,025,695 - -0.5 1,025,702 - -0.4 1,025,702 - +0.8 1,025,706 + -2.1 1,025,891 - SM_b21362 0.50 -0.3
Or see this region's nucleotide sequence