Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21277 and SM_b21278 overlap by 4 nucleotides SM_b21278 and SM_b21279 are separated by 6 nucleotides
SM_b21277: SM_b21277 - inosine-uridine preferring nucleoside hydrolase, at 850,786 to 851,709
_b21277
SM_b21278: SM_b21278 - adenine deaminase, at 851,706 to 853,487
_b21278
SM_b21279: SM_b21279 - amidohydrolase, at 853,494 to 854,663
_b21279
Position (kb) 851
852
853
854 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 851.013 kb on + strand, within SM_b21277 at 851.014 kb on - strand, within SM_b21277 at 851.014 kb on - strand, within SM_b21277 at 851.158 kb on - strand, within SM_b21277 at 851.253 kb on + strand, within SM_b21277 at 851.253 kb on + strand, within SM_b21277 at 851.444 kb on - strand, within SM_b21277 at 851.488 kb on + strand, within SM_b21277 at 851.488 kb on + strand, within SM_b21277 at 851.488 kb on + strand, within SM_b21277 at 851.489 kb on - strand, within SM_b21277 at 851.489 kb on - strand, within SM_b21277 at 851.489 kb on - strand, within SM_b21277 at 851.635 kb on + strand at 851.636 kb on - strand at 851.636 kb on - strand at 851.649 kb on - strand at 851.713 kb on + strand at 851.972 kb on + strand, within SM_b21278 at 851.972 kb on + strand, within SM_b21278 at 851.972 kb on + strand, within SM_b21278 at 851.972 kb on + strand, within SM_b21278 at 851.972 kb on + strand, within SM_b21278 at 851.972 kb on + strand, within SM_b21278 at 851.972 kb on + strand, within SM_b21278 at 851.972 kb on + strand, within SM_b21278 at 851.972 kb on + strand, within SM_b21278 at 851.973 kb on - strand at 851.973 kb on - strand, within SM_b21278 at 851.973 kb on - strand, within SM_b21278 at 851.973 kb on - strand, within SM_b21278 at 851.973 kb on - strand, within SM_b21278 at 851.973 kb on - strand, within SM_b21278 at 852.010 kb on - strand, within SM_b21278 at 852.010 kb on - strand, within SM_b21278 at 852.521 kb on + strand, within SM_b21278 at 852.557 kb on + strand, within SM_b21278 at 852.983 kb on + strand, within SM_b21278 at 852.984 kb on - strand, within SM_b21278 at 853.014 kb on - strand, within SM_b21278 at 853.014 kb on - strand, within SM_b21278 at 853.247 kb on - strand, within SM_b21278 at 853.360 kb on - strand at 853.441 kb on + strand at 853.442 kb on - strand at 853.570 kb on + strand at 853.581 kb on - strand at 853.627 kb on + strand, within SM_b21279 at 853.627 kb on + strand, within SM_b21279 at 853.628 kb on - strand, within SM_b21279 at 853.628 kb on - strand, within SM_b21279 at 853.628 kb on - strand, within SM_b21279 at 853.775 kb on + strand, within SM_b21279 at 853.775 kb on + strand, within SM_b21279 at 853.775 kb on + strand, within SM_b21279 at 853.776 kb on - strand, within SM_b21279 at 853.792 kb on + strand, within SM_b21279 at 853.810 kb on + strand, within SM_b21279 at 853.810 kb on + strand, within SM_b21279 at 853.811 kb on - strand, within SM_b21279 at 853.811 kb on - strand, within SM_b21279 at 853.811 kb on - strand, within SM_b21279 at 853.811 kb on - strand, within SM_b21279 at 853.878 kb on - strand, within SM_b21279 at 853.880 kb on - strand, within SM_b21279 at 854.189 kb on - strand, within SM_b21279 at 854.345 kb on + strand, within SM_b21279
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 851,013 + SM_b21277 0.25 -0.3 851,014 - SM_b21277 0.25 -0.5 851,014 - SM_b21277 0.25 -1.2 851,158 - SM_b21277 0.40 -0.3 851,253 + SM_b21277 0.51 -0.1 851,253 + SM_b21277 0.51 -0.9 851,444 - SM_b21277 0.71 +0.4 851,488 + SM_b21277 0.76 +0.7 851,488 + SM_b21277 0.76 -0.2 851,488 + SM_b21277 0.76 -0.5 851,489 - SM_b21277 0.76 +0.1 851,489 - SM_b21277 0.76 -1.1 851,489 - SM_b21277 0.76 -0.0 851,635 + -0.2 851,636 - -1.2 851,636 - -1.1 851,649 - -0.3 851,713 + +0.4 851,972 + SM_b21278 0.15 +3.6 851,972 + SM_b21278 0.15 -0.4 851,972 + SM_b21278 0.15 +0.6 851,972 + SM_b21278 0.15 +0.2 851,972 + SM_b21278 0.15 -0.2 851,972 + SM_b21278 0.15 +1.2 851,972 + SM_b21278 0.15 -0.4 851,972 + SM_b21278 0.15 -0.2 851,972 + SM_b21278 0.15 +0.8 851,973 - +3.7 851,973 - SM_b21278 0.15 +0.2 851,973 - SM_b21278 0.15 +2.5 851,973 - SM_b21278 0.15 -0.1 851,973 - SM_b21278 0.15 +0.5 851,973 - SM_b21278 0.15 -1.5 852,010 - SM_b21278 0.17 +0.4 852,010 - SM_b21278 0.17 -0.3 852,521 + SM_b21278 0.46 +0.4 852,557 + SM_b21278 0.48 +0.6 852,983 + SM_b21278 0.72 +0.4 852,984 - SM_b21278 0.72 +0.2 853,014 - SM_b21278 0.73 -0.2 853,014 - SM_b21278 0.73 +0.6 853,247 - SM_b21278 0.86 +0.1 853,360 - -0.1 853,441 + -1.5 853,442 - +0.5 853,570 + +0.5 853,581 - +0.3 853,627 + SM_b21279 0.11 -0.1 853,627 + SM_b21279 0.11 -2.1 853,628 - SM_b21279 0.11 +0.5 853,628 - SM_b21279 0.11 -0.4 853,628 - SM_b21279 0.11 +0.4 853,775 + SM_b21279 0.24 +1.5 853,775 + SM_b21279 0.24 +0.6 853,775 + SM_b21279 0.24 +0.2 853,776 - SM_b21279 0.24 +0.7 853,792 + SM_b21279 0.25 -0.8 853,810 + SM_b21279 0.27 +0.2 853,810 + SM_b21279 0.27 -0.6 853,811 - SM_b21279 0.27 +0.3 853,811 - SM_b21279 0.27 +0.4 853,811 - SM_b21279 0.27 -0.7 853,811 - SM_b21279 0.27 -0.7 853,878 - SM_b21279 0.33 -1.2 853,880 - SM_b21279 0.33 -1.3 854,189 - SM_b21279 0.59 -0.2 854,345 + SM_b21279 0.73 +0.9
Or see this region's nucleotide sequence