Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21249 and SM_b21250 are separated by 410 nucleotides SM_b21250 and SM_b21251 are separated by 105 nucleotides
SM_b21249: SM_b21249 - sulfotransferase, at 817,644 to 818,486
_b21249
SM_b21250: SM_b21250 - glycosyltransferase, at 818,897 to 820,180
_b21250
SM_b21251: SM_b21251 - hypothetical protein, at 820,286 to 822,502
_b21251
Position (kb) 818
819
820
821 Strain fitness (log2 ratio) -2
-1
0
1
2 at 818.020 kb on + strand, within SM_b21249 at 818.021 kb on - strand, within SM_b21249 at 818.040 kb on - strand, within SM_b21249 at 818.059 kb on - strand, within SM_b21249 at 818.113 kb on + strand, within SM_b21249 at 818.114 kb on - strand, within SM_b21249 at 818.145 kb on + strand, within SM_b21249 at 818.145 kb on + strand, within SM_b21249 at 818.146 kb on - strand, within SM_b21249 at 818.287 kb on - strand, within SM_b21249 at 818.303 kb on + strand, within SM_b21249 at 818.304 kb on - strand, within SM_b21249 at 818.304 kb on - strand, within SM_b21249 at 818.314 kb on - strand, within SM_b21249 at 818.314 kb on - strand, within SM_b21249 at 818.314 kb on - strand, within SM_b21249 at 818.362 kb on + strand, within SM_b21249 at 818.363 kb on - strand, within SM_b21249 at 818.393 kb on - strand, within SM_b21249 at 818.432 kb on + strand at 818.440 kb on - strand at 818.534 kb on + strand at 818.576 kb on - strand at 818.695 kb on + strand at 818.695 kb on + strand at 818.695 kb on + strand at 818.792 kb on + strand at 818.827 kb on - strand at 819.018 kb on - strand at 819.018 kb on - strand at 819.031 kb on + strand, within SM_b21250 at 819.032 kb on - strand, within SM_b21250 at 819.032 kb on - strand, within SM_b21250 at 819.176 kb on + strand, within SM_b21250 at 819.456 kb on + strand, within SM_b21250 at 819.456 kb on + strand, within SM_b21250 at 819.457 kb on - strand, within SM_b21250 at 819.457 kb on - strand, within SM_b21250 at 819.458 kb on + strand, within SM_b21250 at 819.458 kb on + strand, within SM_b21250 at 819.530 kb on - strand, within SM_b21250 at 819.595 kb on + strand, within SM_b21250 at 819.595 kb on + strand, within SM_b21250 at 819.596 kb on - strand, within SM_b21250 at 819.828 kb on + strand, within SM_b21250 at 819.829 kb on - strand, within SM_b21250 at 820.067 kb on + strand at 820.068 kb on - strand at 820.084 kb on - strand at 820.190 kb on + strand at 820.325 kb on + strand at 820.325 kb on + strand at 820.325 kb on + strand at 820.326 kb on - strand at 820.326 kb on - strand at 820.326 kb on - strand at 820.326 kb on - strand at 820.326 kb on - strand at 820.336 kb on - strand at 820.343 kb on + strand at 820.395 kb on + strand at 820.395 kb on + strand at 820.396 kb on - strand at 820.396 kb on - strand at 820.396 kb on - strand at 820.876 kb on - strand, within SM_b21251 at 821.023 kb on - strand, within SM_b21251 at 821.072 kb on + strand, within SM_b21251 at 821.072 kb on + strand, within SM_b21251 at 821.072 kb on + strand, within SM_b21251 at 821.073 kb on - strand, within SM_b21251 at 821.073 kb on - strand, within SM_b21251 at 821.077 kb on - strand, within SM_b21251 at 821.077 kb on - strand, within SM_b21251 at 821.165 kb on - strand, within SM_b21251 at 821.165 kb on - strand, within SM_b21251
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 818,020 + SM_b21249 0.45 +0.8 818,021 - SM_b21249 0.45 -0.7 818,040 - SM_b21249 0.47 +0.4 818,059 - SM_b21249 0.49 +1.8 818,113 + SM_b21249 0.56 -0.7 818,114 - SM_b21249 0.56 +0.6 818,145 + SM_b21249 0.59 -0.1 818,145 + SM_b21249 0.59 -0.2 818,146 - SM_b21249 0.60 -0.9 818,287 - SM_b21249 0.76 +0.4 818,303 + SM_b21249 0.78 -0.7 818,304 - SM_b21249 0.78 -0.3 818,304 - SM_b21249 0.78 -1.1 818,314 - SM_b21249 0.79 -0.6 818,314 - SM_b21249 0.79 -0.7 818,314 - SM_b21249 0.79 +0.3 818,362 + SM_b21249 0.85 -0.1 818,363 - SM_b21249 0.85 -0.1 818,393 - SM_b21249 0.89 -0.6 818,432 + +0.5 818,440 - -0.5 818,534 + +0.6 818,576 - +0.5 818,695 + -1.0 818,695 + -0.8 818,695 + +0.4 818,792 + -0.3 818,827 - +0.9 819,018 - -0.6 819,018 - -0.5 819,031 + SM_b21250 0.10 -0.1 819,032 - SM_b21250 0.11 -0.5 819,032 - SM_b21250 0.11 -2.0 819,176 + SM_b21250 0.22 -1.2 819,456 + SM_b21250 0.44 -1.6 819,456 + SM_b21250 0.44 -0.2 819,457 - SM_b21250 0.44 +0.0 819,457 - SM_b21250 0.44 -2.0 819,458 + SM_b21250 0.44 -0.7 819,458 + SM_b21250 0.44 -0.4 819,530 - SM_b21250 0.49 -1.0 819,595 + SM_b21250 0.54 -0.2 819,595 + SM_b21250 0.54 -0.2 819,596 - SM_b21250 0.54 +0.2 819,828 + SM_b21250 0.73 +0.0 819,829 - SM_b21250 0.73 -0.1 820,067 + -0.3 820,068 - +0.7 820,084 - +0.0 820,190 + -0.7 820,325 + -1.4 820,325 + -1.0 820,325 + +1.1 820,326 - +0.9 820,326 - -0.4 820,326 - -0.2 820,326 - +0.2 820,326 - +0.0 820,336 - +0.1 820,343 + -0.5 820,395 + -1.8 820,395 + +0.5 820,396 - +0.1 820,396 - -0.6 820,396 - -0.5 820,876 - SM_b21251 0.27 -0.2 821,023 - SM_b21251 0.33 +0.3 821,072 + SM_b21251 0.35 +0.3 821,072 + SM_b21251 0.35 +0.5 821,072 + SM_b21251 0.35 +0.0 821,073 - SM_b21251 0.35 +0.6 821,073 - SM_b21251 0.35 -1.7 821,077 - SM_b21251 0.36 -0.4 821,077 - SM_b21251 0.36 -0.2 821,165 - SM_b21251 0.40 -0.8 821,165 - SM_b21251 0.40 -0.1
Or see this region's nucleotide sequence