Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21224 and SM_b21225 overlap by 4 nucleotides SM_b21225 and SM_b21226 are separated by 46 nucleotides SM_b21226 and SM_b21227 overlap by 4 nucleotides
SM_b21224: SM_b21224 - bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase, at 787,536 to 789,437
_b21224
SM_b21225: SM_b21225 - inositol monophosphatase, at 789,434 to 790,273
_b21225
SM_b21226: SM_b21226 - hypothetical protein, at 790,320 to 791,060
_b21226
SM_b21227: SM_b21227 - carbamoyl phosphate synthase-like protein, at 791,057 to 792,049
_b21227
Position (kb) 789
790
791 Strain fitness (log2 ratio) -2
-1
0
1 at 788.490 kb on - strand, within SM_b21224 at 788.490 kb on - strand, within SM_b21224 at 788.490 kb on - strand, within SM_b21224 at 788.490 kb on - strand, within SM_b21224 at 789.010 kb on - strand, within SM_b21224 at 789.010 kb on - strand, within SM_b21224 at 789.220 kb on + strand, within SM_b21224 at 789.273 kb on + strand at 789.316 kb on + strand at 789.356 kb on + strand at 789.356 kb on + strand at 789.357 kb on - strand at 789.357 kb on - strand at 789.358 kb on + strand at 789.359 kb on - strand at 789.359 kb on - strand at 789.359 kb on - strand at 789.359 kb on - strand at 789.500 kb on + strand at 789.500 kb on + strand at 789.809 kb on + strand, within SM_b21225 at 789.810 kb on - strand, within SM_b21225 at 789.984 kb on - strand, within SM_b21225 at 790.043 kb on + strand, within SM_b21225 at 790.044 kb on - strand, within SM_b21225 at 790.259 kb on + strand at 790.260 kb on - strand at 790.339 kb on + strand at 790.339 kb on + strand at 790.340 kb on - strand at 790.340 kb on - strand at 790.507 kb on + strand, within SM_b21226 at 790.507 kb on + strand, within SM_b21226 at 790.508 kb on - strand, within SM_b21226 at 790.578 kb on - strand, within SM_b21226 at 790.578 kb on - strand, within SM_b21226 at 790.588 kb on - strand, within SM_b21226 at 790.857 kb on + strand, within SM_b21226 at 791.033 kb on - strand at 791.033 kb on - strand at 791.068 kb on + strand at 791.068 kb on + strand at 791.069 kb on - strand at 791.143 kb on - strand at 791.180 kb on + strand, within SM_b21227 at 791.198 kb on + strand, within SM_b21227 at 791.199 kb on - strand, within SM_b21227 at 791.229 kb on - strand, within SM_b21227
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 788,490 - SM_b21224 0.50 -1.9 788,490 - SM_b21224 0.50 -0.4 788,490 - SM_b21224 0.50 +0.5 788,490 - SM_b21224 0.50 +0.2 789,010 - SM_b21224 0.77 +1.2 789,010 - SM_b21224 0.77 +0.8 789,220 + SM_b21224 0.89 +0.8 789,273 + -0.2 789,316 + +0.1 789,356 + -0.1 789,356 + -0.4 789,357 - -0.3 789,357 - -0.5 789,358 + -0.9 789,359 - -0.3 789,359 - +0.4 789,359 - -0.7 789,359 - -0.2 789,500 + +0.5 789,500 + -2.5 789,809 + SM_b21225 0.45 -0.3 789,810 - SM_b21225 0.45 -0.9 789,984 - SM_b21225 0.65 +0.3 790,043 + SM_b21225 0.72 -0.4 790,044 - SM_b21225 0.73 -0.9 790,259 + -1.0 790,260 - -2.6 790,339 + -0.3 790,339 + +0.0 790,340 - +0.0 790,340 - -1.1 790,507 + SM_b21226 0.25 -0.4 790,507 + SM_b21226 0.25 +0.9 790,508 - SM_b21226 0.25 +1.1 790,578 - SM_b21226 0.35 -1.2 790,578 - SM_b21226 0.35 +1.5 790,588 - SM_b21226 0.36 +0.3 790,857 + SM_b21226 0.72 -1.6 791,033 - -0.3 791,033 - -0.4 791,068 + +0.1 791,068 + -1.4 791,069 - -1.2 791,143 - -0.4 791,180 + SM_b21227 0.12 +1.5 791,198 + SM_b21227 0.14 -1.1 791,199 - SM_b21227 0.14 -1.9 791,229 - SM_b21227 0.17 -0.3
Or see this region's nucleotide sequence