Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21183

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21182 and SM_b21183 are separated by 189 nucleotidesSM_b21183 and SM_b21184 are separated by 104 nucleotides SM_b21182: SM_b21182 - hypothetical protein, at 929,179 to 930,363 _b21182 SM_b21183: SM_b21183 - molecular chaperone HtpG, at 930,553 to 932,442 _b21183 SM_b21184: SM_b21184 - acetate kinase, at 932,547 to 933,725 _b21184 Position (kb) 930 931 932 933Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 929.554 kb on + strand, within SM_b21182at 929.554 kb on + strand, within SM_b21182at 929.554 kb on + strand, within SM_b21182at 929.555 kb on - strand, within SM_b21182at 929.591 kb on - strand, within SM_b21182at 929.591 kb on - strand, within SM_b21182at 929.614 kb on + strand, within SM_b21182at 929.614 kb on + strand, within SM_b21182at 929.614 kb on + strand, within SM_b21182at 929.700 kb on + strand, within SM_b21182at 929.701 kb on - strand, within SM_b21182at 929.887 kb on - strand, within SM_b21182at 930.083 kb on - strand, within SM_b21182at 930.159 kb on - strand, within SM_b21182at 930.312 kb on + strandat 930.367 kb on - strandat 930.367 kb on - strandat 930.382 kb on + strandat 930.382 kb on + strandat 930.383 kb on - strandat 930.383 kb on - strandat 930.384 kb on + strandat 930.385 kb on - strandat 930.385 kb on - strandat 930.546 kb on + strandat 930.546 kb on + strandat 930.546 kb on + strandat 931.158 kb on - strand, within SM_b21183at 931.160 kb on + strand, within SM_b21183at 931.160 kb on + strand, within SM_b21183at 931.160 kb on + strand, within SM_b21183at 931.161 kb on - strand, within SM_b21183at 931.161 kb on - strand, within SM_b21183at 931.161 kb on - strand, within SM_b21183at 931.161 kb on - strand, within SM_b21183at 931.161 kb on - strand, within SM_b21183at 931.161 kb on - strand, within SM_b21183at 931.196 kb on + strand, within SM_b21183at 931.197 kb on - strand, within SM_b21183at 931.197 kb on - strand, within SM_b21183at 931.286 kb on + strand, within SM_b21183at 931.286 kb on + strand, within SM_b21183at 931.287 kb on - strand, within SM_b21183at 931.404 kb on + strand, within SM_b21183at 931.496 kb on + strand, within SM_b21183at 931.544 kb on + strand, within SM_b21183at 931.544 kb on + strand, within SM_b21183at 931.544 kb on + strand, within SM_b21183at 931.544 kb on + strand, within SM_b21183at 931.545 kb on - strand, within SM_b21183at 931.620 kb on + strand, within SM_b21183at 931.652 kb on - strand, within SM_b21183at 931.652 kb on - strand, within SM_b21183at 931.674 kb on - strand, within SM_b21183at 931.705 kb on - strand, within SM_b21183at 931.706 kb on + strandat 931.707 kb on - strand, within SM_b21183at 931.896 kb on + strand, within SM_b21183at 931.897 kb on - strand, within SM_b21183at 931.897 kb on - strand, within SM_b21183at 931.949 kb on + strand, within SM_b21183at 932.045 kb on + strand, within SM_b21183at 932.046 kb on - strand, within SM_b21183at 932.046 kb on - strand, within SM_b21183at 932.289 kb on - strandat 932.357 kb on + strandat 932.842 kb on - strand, within SM_b21184at 933.030 kb on + strand, within SM_b21184at 933.031 kb on - strand, within SM_b21184at 933.051 kb on + strand, within SM_b21184at 933.051 kb on + strand, within SM_b21184at 933.051 kb on + strand, within SM_b21184at 933.052 kb on - strand, within SM_b21184at 933.099 kb on + strand, within SM_b21184at 933.099 kb on + strand, within SM_b21184at 933.099 kb on + strand, within SM_b21184at 933.100 kb on - strand, within SM_b21184at 933.100 kb on - strand, within SM_b21184at 933.100 kb on - strand, within SM_b21184at 933.100 kb on - strand, within SM_b21184at 933.101 kb on + strand, within SM_b21184at 933.101 kb on + strand, within SM_b21184at 933.314 kb on + strand, within SM_b21184at 933.314 kb on + strand, within SM_b21184at 933.314 kb on + strand, within SM_b21184

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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929,554 + SM_b21182 0.32 +0.4
929,554 + SM_b21182 0.32 -0.8
929,554 + SM_b21182 0.32 +0.6
929,555 - SM_b21182 0.32 +0.4
929,591 - SM_b21182 0.35 +1.3
929,591 - SM_b21182 0.35 +0.5
929,614 + SM_b21182 0.37 +1.4
929,614 + SM_b21182 0.37 -0.0
929,614 + SM_b21182 0.37 -0.9
929,700 + SM_b21182 0.44 +0.5
929,701 - SM_b21182 0.44 +0.2
929,887 - SM_b21182 0.60 +1.8
930,083 - SM_b21182 0.76 +0.6
930,159 - SM_b21182 0.83 +1.7
930,312 + +0.2
930,367 - -0.4
930,367 - -0.7
930,382 + +1.5
930,382 + -0.3
930,383 - +0.2
930,383 - +0.2
930,384 + +0.1
930,385 - -0.1
930,385 - +1.1
930,546 + -0.3
930,546 + +0.0
930,546 + -2.4
931,158 - SM_b21183 0.32 +2.1
931,160 + SM_b21183 0.32 +2.5
931,160 + SM_b21183 0.32 +0.1
931,160 + SM_b21183 0.32 +0.5
931,161 - SM_b21183 0.32 +0.2
931,161 - SM_b21183 0.32 +0.7
931,161 - SM_b21183 0.32 +0.5
931,161 - SM_b21183 0.32 +1.9
931,161 - SM_b21183 0.32 -0.1
931,161 - SM_b21183 0.32 +0.3
931,196 + SM_b21183 0.34 +1.1
931,197 - SM_b21183 0.34 -0.4
931,197 - SM_b21183 0.34 -0.0
931,286 + SM_b21183 0.39 +1.1
931,286 + SM_b21183 0.39 -0.7
931,287 - SM_b21183 0.39 -0.3
931,404 + SM_b21183 0.45 -0.7
931,496 + SM_b21183 0.50 -0.5
931,544 + SM_b21183 0.52 +0.2
931,544 + SM_b21183 0.52 +0.9
931,544 + SM_b21183 0.52 +0.7
931,544 + SM_b21183 0.52 -0.7
931,545 - SM_b21183 0.52 +0.3
931,620 + SM_b21183 0.56 -0.9
931,652 - SM_b21183 0.58 +0.7
931,652 - SM_b21183 0.58 -0.2
931,674 - SM_b21183 0.59 +0.6
931,705 - SM_b21183 0.61 +0.7
931,706 + +2.1
931,707 - SM_b21183 0.61 +1.4
931,896 + SM_b21183 0.71 -0.6
931,897 - SM_b21183 0.71 +1.5
931,897 - SM_b21183 0.71 +0.4
931,949 + SM_b21183 0.74 +0.2
932,045 + SM_b21183 0.79 +0.4
932,046 - SM_b21183 0.79 +0.6
932,046 - SM_b21183 0.79 +0.4
932,289 - +1.1
932,357 + -0.1
932,842 - SM_b21184 0.25 -0.3
933,030 + SM_b21184 0.41 -0.5
933,031 - SM_b21184 0.41 +0.1
933,051 + SM_b21184 0.43 -0.7
933,051 + SM_b21184 0.43 -2.9
933,051 + SM_b21184 0.43 -0.3
933,052 - SM_b21184 0.43 +0.1
933,099 + SM_b21184 0.47 -0.4
933,099 + SM_b21184 0.47 +0.2
933,099 + SM_b21184 0.47 +0.8
933,100 - SM_b21184 0.47 -0.2
933,100 - SM_b21184 0.47 +0.2
933,100 - SM_b21184 0.47 -0.2
933,100 - SM_b21184 0.47 -0.5
933,101 + SM_b21184 0.47 -0.5
933,101 + SM_b21184 0.47 +0.4
933,314 + SM_b21184 0.65 +0.6
933,314 + SM_b21184 0.65 +0.5
933,314 + SM_b21184 0.65 -0.7

Or see this region's nucleotide sequence