Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21174 and SM_b21175 are separated by 9 nucleotides SM_b21175 and SM_b21176 are separated by 171 nucleotides
SM_b21174: SM_b21174 - phosphate uptake ABC transporter permease, at 919,613 to 921,130
_b21174
SM_b21175: SM_b21175 - phosphate uptake ABC transporter permease, at 921,140 to 922,102
_b21175
SM_b21176: SM_b21176 - phosphate uptake ABC transporter substrate-binding protein precursor, at 922,274 to 923,179
_b21176
Position (kb) 921
922
923 Strain fitness (log2 ratio) -2
-1
0
1 at 920.331 kb on + strand, within SM_b21174 at 920.908 kb on - strand, within SM_b21174 at 920.913 kb on - strand, within SM_b21174 at 920.929 kb on - strand, within SM_b21174 at 921.088 kb on + strand at 921.141 kb on + strand at 921.141 kb on + strand at 921.366 kb on + strand, within SM_b21175 at 921.756 kb on + strand, within SM_b21175 at 921.786 kb on + strand, within SM_b21175 at 921.811 kb on - strand, within SM_b21175 at 922.011 kb on + strand at 922.085 kb on - strand at 922.476 kb on - strand, within SM_b21176 at 922.796 kb on - strand, within SM_b21176 at 922.899 kb on + strand, within SM_b21176 at 922.899 kb on + strand, within SM_b21176 at 922.899 kb on + strand, within SM_b21176 at 922.900 kb on - strand, within SM_b21176 at 922.978 kb on - strand, within SM_b21176
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 920,331 + SM_b21174 0.47 -1.1 920,908 - SM_b21174 0.85 +1.4 920,913 - SM_b21174 0.86 -1.3 920,929 - SM_b21174 0.87 +0.2 921,088 + +0.3 921,141 + -0.9 921,141 + -0.5 921,366 + SM_b21175 0.23 +0.0 921,756 + SM_b21175 0.64 -0.4 921,786 + SM_b21175 0.67 -0.7 921,811 - SM_b21175 0.70 -0.2 922,011 + -0.5 922,085 - -2.0 922,476 - SM_b21176 0.22 +0.0 922,796 - SM_b21176 0.58 +0.5 922,899 + SM_b21176 0.69 -0.7 922,899 + SM_b21176 0.69 -0.4 922,899 + SM_b21176 0.69 +0.3 922,900 - SM_b21176 0.69 +0.6 922,978 - SM_b21176 0.78 -1.5
Or see this region's nucleotide sequence