Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21171 and SM_b21172 overlap by 35 nucleotides SM_b21172 and SM_b21173 are separated by 79 nucleotides SM_b21173 and SM_b21174 overlap by 4 nucleotides
SM_b21171: SM_b21171 - enzyme protein, at 917,431 to 918,570
_b21171
SM_b21172: SM_b21172 - hypothetical protein, at 918,536 to 919,345
_b21172
SM_b21173: SM_b21173 - hypothetical protein, at 919,425 to 919,616
_b21173
SM_b21174: SM_b21174 - phosphate uptake ABC transporter permease, at 919,613 to 921,130
_b21174
Position (kb) 918
919
920 Strain fitness (log2 ratio) -1
0
1
2
3 at 917.660 kb on + strand, within SM_b21171 at 917.745 kb on + strand, within SM_b21171 at 917.945 kb on + strand, within SM_b21171 at 917.945 kb on + strand, within SM_b21171 at 918.021 kb on - strand, within SM_b21171 at 918.024 kb on - strand, within SM_b21171 at 918.033 kb on - strand, within SM_b21171 at 918.033 kb on - strand, within SM_b21171 at 918.122 kb on + strand, within SM_b21171 at 918.122 kb on + strand, within SM_b21171 at 918.122 kb on + strand, within SM_b21171 at 918.428 kb on + strand, within SM_b21171 at 918.429 kb on - strand, within SM_b21171 at 918.760 kb on + strand, within SM_b21172 at 918.761 kb on - strand, within SM_b21172 at 918.795 kb on + strand, within SM_b21172 at 918.796 kb on - strand, within SM_b21172 at 918.802 kb on - strand, within SM_b21172 at 918.996 kb on + strand, within SM_b21172 at 919.157 kb on + strand, within SM_b21172 at 919.157 kb on + strand, within SM_b21172 at 919.272 kb on + strand at 919.501 kb on + strand, within SM_b21173 at 919.502 kb on - strand, within SM_b21173 at 919.517 kb on + strand, within SM_b21173 at 919.699 kb on + strand at 919.699 kb on + strand at 919.702 kb on - strand at 919.752 kb on - strand at 920.331 kb on + strand, within SM_b21174
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 917,660 + SM_b21171 0.20 -0.4 917,745 + SM_b21171 0.28 +1.1 917,945 + SM_b21171 0.45 -1.7 917,945 + SM_b21171 0.45 +1.4 918,021 - SM_b21171 0.52 +0.2 918,024 - SM_b21171 0.52 +0.0 918,033 - SM_b21171 0.53 +0.9 918,033 - SM_b21171 0.53 +0.5 918,122 + SM_b21171 0.61 +0.1 918,122 + SM_b21171 0.61 -0.9 918,122 + SM_b21171 0.61 -1.2 918,428 + SM_b21171 0.87 +1.0 918,429 - SM_b21171 0.88 -0.0 918,760 + SM_b21172 0.28 -0.6 918,761 - SM_b21172 0.28 -0.6 918,795 + SM_b21172 0.32 +0.9 918,796 - SM_b21172 0.32 +0.3 918,802 - SM_b21172 0.33 +1.1 918,996 + SM_b21172 0.57 +1.5 919,157 + SM_b21172 0.77 +0.3 919,157 + SM_b21172 0.77 +0.4 919,272 + +1.0 919,501 + SM_b21173 0.40 -0.1 919,502 - SM_b21173 0.40 -0.9 919,517 + SM_b21173 0.48 +0.1 919,699 + +0.0 919,699 + +1.7 919,702 - +3.7 919,752 - -0.2 920,331 + SM_b21174 0.47 -1.1
Or see this region's nucleotide sequence