Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21170

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21168 and SM_b21169 are separated by 35 nucleotidesSM_b21169 and SM_b21170 are separated by 19 nucleotidesSM_b21170 and SM_b21171 overlap by 4 nucleotides SM_b21168: SM_b21168 - integral membrane transporter protein, at 915,182 to 916,366 _b21168 SM_b21169: SM_b21169 - ArsR family transcriptional regulator, at 916,402 to 916,827 _b21169 SM_b21170: SM_b21170 - guanylate kinase, at 916,847 to 917,434 _b21170 SM_b21171: SM_b21171 - enzyme protein, at 917,431 to 918,570 _b21171 Position (kb) 916 917 918Strain fitness (log2 ratio) -2 -1 0 1at 916.136 kb on + strand, within SM_b21168at 916.137 kb on - strand, within SM_b21168at 916.216 kb on - strand, within SM_b21168at 916.327 kb on + strandat 916.327 kb on + strandat 916.328 kb on - strandat 916.442 kb on + strandat 916.505 kb on + strand, within SM_b21169at 916.505 kb on + strand, within SM_b21169at 916.505 kb on + strand, within SM_b21169at 916.505 kb on + strand, within SM_b21169at 916.506 kb on - strand, within SM_b21169at 916.614 kb on + strand, within SM_b21169at 916.614 kb on + strand, within SM_b21169at 916.614 kb on + strand, within SM_b21169at 916.615 kb on - strand, within SM_b21169at 916.621 kb on + strand, within SM_b21169at 916.621 kb on + strand, within SM_b21169at 916.622 kb on - strandat 916.622 kb on - strand, within SM_b21169at 916.622 kb on - strand, within SM_b21169at 916.622 kb on - strandat 916.622 kb on - strand, within SM_b21169at 916.622 kb on - strand, within SM_b21169at 916.622 kb on - strand, within SM_b21169at 916.659 kb on + strand, within SM_b21169at 916.660 kb on - strand, within SM_b21169at 916.660 kb on - strand, within SM_b21169at 916.743 kb on + strand, within SM_b21169at 916.867 kb on + strandat 916.867 kb on + strandat 917.081 kb on - strand, within SM_b21170at 917.127 kb on - strand, within SM_b21170at 917.181 kb on + strand, within SM_b21170at 917.182 kb on - strand, within SM_b21170at 917.182 kb on - strand, within SM_b21170at 917.476 kb on + strandat 917.477 kb on - strandat 917.660 kb on + strand, within SM_b21171at 917.745 kb on + strand, within SM_b21171at 917.945 kb on + strand, within SM_b21171at 917.945 kb on + strand, within SM_b21171at 918.021 kb on - strand, within SM_b21171at 918.024 kb on - strand, within SM_b21171at 918.033 kb on - strand, within SM_b21171at 918.033 kb on - strand, within SM_b21171at 918.122 kb on + strand, within SM_b21171at 918.122 kb on + strand, within SM_b21171at 918.122 kb on + strand, within SM_b21171at 918.428 kb on + strand, within SM_b21171at 918.429 kb on - strand, within SM_b21171

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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916,136 + SM_b21168 0.81 +0.2
916,137 - SM_b21168 0.81 -0.4
916,216 - SM_b21168 0.87 +0.1
916,327 + +0.5
916,327 + -0.5
916,328 - -0.8
916,442 + +0.3
916,505 + SM_b21169 0.24 -0.0
916,505 + SM_b21169 0.24 -1.9
916,505 + SM_b21169 0.24 -0.4
916,505 + SM_b21169 0.24 +0.7
916,506 - SM_b21169 0.24 +0.2
916,614 + SM_b21169 0.50 -0.1
916,614 + SM_b21169 0.50 +0.6
916,614 + SM_b21169 0.50 -0.2
916,615 - SM_b21169 0.50 -0.2
916,621 + SM_b21169 0.51 -0.1
916,621 + SM_b21169 0.51 -0.1
916,622 - -0.5
916,622 - SM_b21169 0.52 -0.1
916,622 - SM_b21169 0.52 +0.2
916,622 - -0.2
916,622 - SM_b21169 0.52 -1.1
916,622 - SM_b21169 0.52 -0.3
916,622 - SM_b21169 0.52 -0.4
916,659 + SM_b21169 0.60 +0.0
916,660 - SM_b21169 0.61 +0.1
916,660 - SM_b21169 0.61 -1.8
916,743 + SM_b21169 0.80 +1.1
916,867 + +0.8
916,867 + -1.0
917,081 - SM_b21170 0.40 +1.7
917,127 - SM_b21170 0.48 +1.2
917,181 + SM_b21170 0.57 +0.8
917,182 - SM_b21170 0.57 +1.1
917,182 - SM_b21170 0.57 +1.1
917,476 + +0.3
917,477 - -0.8
917,660 + SM_b21171 0.20 -0.4
917,745 + SM_b21171 0.28 +1.1
917,945 + SM_b21171 0.45 -1.7
917,945 + SM_b21171 0.45 +1.4
918,021 - SM_b21171 0.52 +0.2
918,024 - SM_b21171 0.52 +0.0
918,033 - SM_b21171 0.53 +0.9
918,033 - SM_b21171 0.53 +0.5
918,122 + SM_b21171 0.61 +0.1
918,122 + SM_b21171 0.61 -0.9
918,122 + SM_b21171 0.61 -1.2
918,428 + SM_b21171 0.87 +1.0
918,429 - SM_b21171 0.88 -0.0

Or see this region's nucleotide sequence