Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21163 and SM_b21164 are separated by 2 nucleotides SM_b21164 and SM_b21165 are separated by 1 nucleotides
SM_b21163: SM_b21163 - Urocanate hydratase (EC 4.2.1.49) (from data) , at 908,169 to 909,842
_b21163
SM_b21164: SM_b21164 - N-formylglutamate deformylase (EC 3.5.1.68) (from data) , at 909,845 to 910,660
_b21164
SM_b21165: SM_b21165 - Histidine ammonia-lyase (EC 4.3.1.3) (from data) , at 910,662 to 912,197
_b21165
Position (kb)
909
910
911 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 908.878 kb on + strand, within SM_b21163 at 909.025 kb on + strand, within SM_b21163 at 909.026 kb on - strand, within SM_b21163 at 909.106 kb on - strand, within SM_b21163 at 909.106 kb on - strand, within SM_b21163 at 909.106 kb on - strand, within SM_b21163 at 909.106 kb on - strand, within SM_b21163 at 909.106 kb on - strand, within SM_b21163 at 909.397 kb on + strand, within SM_b21163 at 909.398 kb on - strand, within SM_b21163 at 909.430 kb on + strand, within SM_b21163 at 909.430 kb on + strand, within SM_b21163 at 909.431 kb on - strand, within SM_b21163 at 909.431 kb on - strand, within SM_b21163 at 909.460 kb on + strand, within SM_b21163 at 909.691 kb on + strand at 909.821 kb on + strand at 909.822 kb on - strand at 910.154 kb on - strand, within SM_b21164 at 910.325 kb on + strand, within SM_b21164 at 910.326 kb on - strand, within SM_b21164 at 910.326 kb on - strand, within SM_b21164 at 910.364 kb on - strand, within SM_b21164 at 910.454 kb on + strand, within SM_b21164 at 910.455 kb on - strand, within SM_b21164 at 910.455 kb on - strand, within SM_b21164 at 910.455 kb on - strand, within SM_b21164 at 910.455 kb on - strand, within SM_b21164 at 910.513 kb on - strand, within SM_b21164 at 910.759 kb on + strand at 910.759 kb on + strand at 910.759 kb on + strand at 911.104 kb on + strand, within SM_b21165 at 911.359 kb on + strand, within SM_b21165 at 911.359 kb on + strand, within SM_b21165 at 911.359 kb on + strand, within SM_b21165 at 911.360 kb on - strand, within SM_b21165 at 911.360 kb on - strand, within SM_b21165 at 911.459 kb on + strand, within SM_b21165
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 908,878 + SM_b21163 0.42 +1.5 909,025 + SM_b21163 0.51 +0.6 909,026 - SM_b21163 0.51 -0.7 909,106 - SM_b21163 0.56 +0.3 909,106 - SM_b21163 0.56 +0.0 909,106 - SM_b21163 0.56 -0.4 909,106 - SM_b21163 0.56 +0.5 909,106 - SM_b21163 0.56 -0.8 909,397 + SM_b21163 0.73 +0.7 909,398 - SM_b21163 0.73 -0.2 909,430 + SM_b21163 0.75 +0.4 909,430 + SM_b21163 0.75 +1.7 909,431 - SM_b21163 0.75 +0.4 909,431 - SM_b21163 0.75 -0.1 909,460 + SM_b21163 0.77 -2.0 909,691 + -0.1 909,821 + +0.5 909,822 - +0.8 910,154 - SM_b21164 0.38 -0.5 910,325 + SM_b21164 0.59 +2.8 910,326 - SM_b21164 0.59 +0.7 910,326 - SM_b21164 0.59 +0.7 910,364 - SM_b21164 0.64 -0.2 910,454 + SM_b21164 0.75 +0.8 910,455 - SM_b21164 0.75 +0.8 910,455 - SM_b21164 0.75 +0.1 910,455 - SM_b21164 0.75 +0.5 910,455 - SM_b21164 0.75 +0.2 910,513 - SM_b21164 0.82 -0.2 910,759 + -0.4 910,759 + -1.8 910,759 + -1.7 911,104 + SM_b21165 0.29 +0.2 911,359 + SM_b21165 0.45 +0.1 911,359 + SM_b21165 0.45 +0.6 911,359 + SM_b21165 0.45 -0.2 911,360 - SM_b21165 0.45 -0.1 911,360 - SM_b21165 0.45 -0.9 911,459 + SM_b21165 0.52 -0.8
Or see this region's nucleotide sequence