Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21152

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21151 and SM_b21152 are separated by 88 nucleotidesSM_b21152 and SM_b21153 are separated by 2 nucleotidesSM_b21153 and SM_b21154 are separated by 150 nucleotides SM_b21151: SM_b21151 - substrate-binding protein of a sugar uptake ABC transporter system, at 895,555 to 896,784 _b21151 SM_b21152: SM_b21152 - sugar uptake ABC transporter ATP-binding protein, at 896,873 to 898,006 _b21152 SM_b21153: SM_b21153 - acetyltransferase, at 898,009 to 898,509 _b21153 SM_b21154: SM_b21154 - hypothetical protein, at 898,660 to 899,043 _b21154 Position (kb) 896 897 898 899Strain fitness (log2 ratio) -2 -1 0 1 2at 895.906 kb on + strand, within SM_b21151at 895.907 kb on - strand, within SM_b21151at 895.914 kb on + strand, within SM_b21151at 895.914 kb on + strand, within SM_b21151at 895.960 kb on - strand, within SM_b21151at 895.985 kb on - strand, within SM_b21151at 896.158 kb on + strand, within SM_b21151at 896.160 kb on + strand, within SM_b21151at 896.161 kb on - strand, within SM_b21151at 896.161 kb on - strand, within SM_b21151at 896.194 kb on - strand, within SM_b21151at 896.194 kb on - strand, within SM_b21151at 896.194 kb on - strand, within SM_b21151at 896.194 kb on - strand, within SM_b21151at 896.236 kb on + strand, within SM_b21151at 896.236 kb on + strand, within SM_b21151at 896.236 kb on + strand, within SM_b21151at 896.278 kb on + strand, within SM_b21151at 896.278 kb on + strand, within SM_b21151at 896.388 kb on - strand, within SM_b21151at 896.625 kb on + strand, within SM_b21151at 896.636 kb on + strand, within SM_b21151at 896.636 kb on + strand, within SM_b21151at 896.641 kb on + strand, within SM_b21151at 896.642 kb on - strand, within SM_b21151at 896.642 kb on - strand, within SM_b21151at 896.776 kb on + strandat 896.777 kb on - strandat 896.783 kb on - strandat 896.783 kb on - strandat 896.783 kb on - strandat 896.783 kb on - strandat 896.783 kb on - strandat 896.783 kb on - strandat 896.830 kb on + strandat 896.830 kb on + strandat 896.830 kb on + strandat 896.830 kb on + strandat 896.872 kb on - strandat 896.918 kb on + strandat 896.918 kb on + strandat 896.918 kb on + strandat 896.919 kb on - strandat 896.919 kb on - strandat 896.919 kb on - strandat 896.919 kb on - strandat 897.122 kb on + strand, within SM_b21152at 897.122 kb on + strand, within SM_b21152at 897.122 kb on + strand, within SM_b21152at 897.123 kb on - strand, within SM_b21152at 897.123 kb on - strand, within SM_b21152at 897.123 kb on - strand, within SM_b21152at 897.131 kb on + strand, within SM_b21152at 897.139 kb on + strand, within SM_b21152at 897.232 kb on - strand, within SM_b21152at 897.232 kb on - strand, within SM_b21152at 897.437 kb on + strand, within SM_b21152at 897.437 kb on + strand, within SM_b21152at 897.537 kb on - strand, within SM_b21152at 897.537 kb on - strand, within SM_b21152at 897.553 kb on + strand, within SM_b21152at 897.554 kb on - strand, within SM_b21152at 897.555 kb on + strand, within SM_b21152at 897.555 kb on + strand, within SM_b21152at 897.555 kb on + strand, within SM_b21152at 897.556 kb on - strand, within SM_b21152at 897.644 kb on + strand, within SM_b21152at 897.644 kb on + strand, within SM_b21152at 897.644 kb on + strand, within SM_b21152at 897.706 kb on - strand, within SM_b21152at 897.777 kb on + strand, within SM_b21152at 897.809 kb on + strand, within SM_b21152at 897.810 kb on - strand, within SM_b21152at 897.810 kb on - strand, within SM_b21152at 897.839 kb on + strand, within SM_b21152at 897.839 kb on + strand, within SM_b21152at 897.840 kb on - strand, within SM_b21152at 897.840 kb on - strand, within SM_b21152at 898.004 kb on + strandat 898.005 kb on - strandat 898.270 kb on + strand, within SM_b21153at 898.271 kb on - strand, within SM_b21153at 898.687 kb on + strandat 898.687 kb on + strandat 898.687 kb on + strandat 898.687 kb on + strandat 898.687 kb on + strandat 898.688 kb on - strandat 898.688 kb on - strandat 898.688 kb on - strandat 898.688 kb on - strandat 898.688 kb on - strandat 898.688 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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895,906 + SM_b21151 0.29 -0.1
895,907 - SM_b21151 0.29 -1.2
895,914 + SM_b21151 0.29 +1.0
895,914 + SM_b21151 0.29 -0.5
895,960 - SM_b21151 0.33 -0.5
895,985 - SM_b21151 0.35 -1.9
896,158 + SM_b21151 0.49 -1.6
896,160 + SM_b21151 0.49 +0.6
896,161 - SM_b21151 0.49 -0.8
896,161 - SM_b21151 0.49 +0.7
896,194 - SM_b21151 0.52 +1.1
896,194 - SM_b21151 0.52 +1.1
896,194 - SM_b21151 0.52 +0.4
896,194 - SM_b21151 0.52 +0.4
896,236 + SM_b21151 0.55 -1.0
896,236 + SM_b21151 0.55 -1.1
896,236 + SM_b21151 0.55 -1.6
896,278 + SM_b21151 0.59 +0.4
896,278 + SM_b21151 0.59 -0.8
896,388 - SM_b21151 0.68 +0.0
896,625 + SM_b21151 0.87 -0.1
896,636 + SM_b21151 0.88 -0.4
896,636 + SM_b21151 0.88 -0.5
896,641 + SM_b21151 0.88 +0.2
896,642 - SM_b21151 0.88 +0.4
896,642 - SM_b21151 0.88 -0.0
896,776 + -0.1
896,777 - -0.7
896,783 - -1.0
896,783 - +1.8
896,783 - -0.5
896,783 - -0.2
896,783 - +0.1
896,783 - -0.8
896,830 + -0.2
896,830 + -2.2
896,830 + -0.7
896,830 + +0.4
896,872 - -0.5
896,918 + -0.3
896,918 + +2.2
896,918 + +0.1
896,919 - -0.2
896,919 - +0.0
896,919 - +0.0
896,919 - +0.3
897,122 + SM_b21152 0.22 +1.0
897,122 + SM_b21152 0.22 -0.2
897,122 + SM_b21152 0.22 +0.2
897,123 - SM_b21152 0.22 -1.2
897,123 - SM_b21152 0.22 -0.9
897,123 - SM_b21152 0.22 -0.1
897,131 + SM_b21152 0.23 +0.2
897,139 + SM_b21152 0.23 -1.1
897,232 - SM_b21152 0.32 -0.5
897,232 - SM_b21152 0.32 -0.7
897,437 + SM_b21152 0.50 -0.1
897,437 + SM_b21152 0.50 -0.5
897,537 - SM_b21152 0.59 -1.0
897,537 - SM_b21152 0.59 -2.0
897,553 + SM_b21152 0.60 -0.2
897,554 - SM_b21152 0.60 -0.6
897,555 + SM_b21152 0.60 -0.0
897,555 + SM_b21152 0.60 +0.7
897,555 + SM_b21152 0.60 -0.4
897,556 - SM_b21152 0.60 -1.1
897,644 + SM_b21152 0.68 +0.8
897,644 + SM_b21152 0.68 -0.0
897,644 + SM_b21152 0.68 -0.3
897,706 - SM_b21152 0.73 -0.2
897,777 + SM_b21152 0.80 -0.2
897,809 + SM_b21152 0.83 -0.7
897,810 - SM_b21152 0.83 -0.2
897,810 - SM_b21152 0.83 -0.3
897,839 + SM_b21152 0.85 -0.4
897,839 + SM_b21152 0.85 +0.0
897,840 - SM_b21152 0.85 -0.7
897,840 - SM_b21152 0.85 +0.3
898,004 + +2.5
898,005 - -0.1
898,270 + SM_b21153 0.52 -0.1
898,271 - SM_b21153 0.52 -0.1
898,687 + -0.9
898,687 + +0.4
898,687 + -0.6
898,687 + +0.3
898,687 + +0.5
898,688 - -0.5
898,688 - +0.4
898,688 - +0.7
898,688 - +0.3
898,688 - -0.0
898,688 - -0.5

Or see this region's nucleotide sequence