Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21148

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21146 and SM_b21147 overlap by 1 nucleotidesSM_b21147 and SM_b21148 are separated by 188 nucleotidesSM_b21148 and SM_b21149 are separated by 12 nucleotidesSM_b21149 and SM_b21150 overlap by 4 nucleotides SM_b21146: SM_b21146 - choline uptake ABC transporter ATP-binding protein, at 890,750 to 891,688 _b21146 SM_b21147: SM_b21147 - choline uptake ABC transporter permease, at 891,688 to 892,425 _b21147 SM_b21148: SM_b21148 - oxidoreductase, at 892,614 to 893,774 _b21148 SM_b21149: SM_b21149 - sugar uptake ABC transporter permease, at 893,787 to 894,671 _b21149 SM_b21150: SM_b21150 - sugar uptake ABC transporter permease, at 894,668 to 895,525 _b21150 Position (kb) 892 893 894Strain fitness (log2 ratio) -2 -1 0 1 2at 891.811 kb on + strand, within SM_b21147at 891.915 kb on + strand, within SM_b21147at 892.060 kb on + strand, within SM_b21147at 892.060 kb on + strand, within SM_b21147at 892.060 kb on + strand, within SM_b21147at 892.491 kb on + strandat 892.662 kb on + strandat 892.662 kb on + strandat 892.663 kb on - strandat 892.704 kb on + strandat 892.770 kb on + strand, within SM_b21148at 892.770 kb on + strand, within SM_b21148at 892.854 kb on - strand, within SM_b21148at 892.860 kb on - strand, within SM_b21148at 893.004 kb on + strand, within SM_b21148at 893.005 kb on - strand, within SM_b21148at 893.077 kb on + strand, within SM_b21148at 893.077 kb on + strand, within SM_b21148at 893.077 kb on + strand, within SM_b21148at 893.077 kb on + strand, within SM_b21148at 893.077 kb on + strand, within SM_b21148at 893.077 kb on + strand, within SM_b21148at 893.078 kb on - strand, within SM_b21148at 893.085 kb on + strand, within SM_b21148at 893.085 kb on + strand, within SM_b21148at 893.085 kb on + strand, within SM_b21148at 893.086 kb on - strand, within SM_b21148at 893.121 kb on + strand, within SM_b21148at 893.130 kb on + strand, within SM_b21148at 893.359 kb on - strand, within SM_b21148at 893.380 kb on - strand, within SM_b21148at 893.380 kb on - strand, within SM_b21148at 893.545 kb on - strand, within SM_b21148at 893.575 kb on - strand, within SM_b21148at 893.848 kb on - strandat 893.882 kb on + strand, within SM_b21149at 893.949 kb on + strand, within SM_b21149at 894.159 kb on + strand, within SM_b21149at 894.160 kb on - strand, within SM_b21149at 894.160 kb on - strand, within SM_b21149at 894.160 kb on - strand, within SM_b21149at 894.162 kb on - strand, within SM_b21149at 894.306 kb on + strand, within SM_b21149at 894.307 kb on - strand, within SM_b21149at 894.307 kb on - strand, within SM_b21149at 894.307 kb on - strand, within SM_b21149at 894.345 kb on + strand, within SM_b21149at 894.346 kb on - strand, within SM_b21149at 894.381 kb on + strand, within SM_b21149at 894.382 kb on - strand, within SM_b21149at 894.538 kb on - strand, within SM_b21149at 894.538 kb on - strand, within SM_b21149at 894.599 kb on + strandat 894.627 kb on + strandat 894.627 kb on + strandat 894.704 kb on + strandat 894.722 kb on + strandat 894.722 kb on + strandat 894.722 kb on + strandat 894.722 kb on + strandat 894.722 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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891,811 + SM_b21147 0.17 -0.5
891,915 + SM_b21147 0.31 +0.2
892,060 + SM_b21147 0.50 +0.4
892,060 + SM_b21147 0.50 +0.8
892,060 + SM_b21147 0.50 -0.2
892,491 + -2.0
892,662 + +1.1
892,662 + -0.5
892,663 - +0.9
892,704 + -0.1
892,770 + SM_b21148 0.13 -0.2
892,770 + SM_b21148 0.13 +0.3
892,854 - SM_b21148 0.21 +0.8
892,860 - SM_b21148 0.21 -1.0
893,004 + SM_b21148 0.34 +1.3
893,005 - SM_b21148 0.34 -0.3
893,077 + SM_b21148 0.40 -0.4
893,077 + SM_b21148 0.40 +0.1
893,077 + SM_b21148 0.40 +0.1
893,077 + SM_b21148 0.40 -0.4
893,077 + SM_b21148 0.40 +0.9
893,077 + SM_b21148 0.40 +1.9
893,078 - SM_b21148 0.40 +0.4
893,085 + SM_b21148 0.41 +0.3
893,085 + SM_b21148 0.41 +0.8
893,085 + SM_b21148 0.41 +0.3
893,086 - SM_b21148 0.41 -0.8
893,121 + SM_b21148 0.44 -1.0
893,130 + SM_b21148 0.44 -0.3
893,359 - SM_b21148 0.64 -1.0
893,380 - SM_b21148 0.66 -0.4
893,380 - SM_b21148 0.66 -0.0
893,545 - SM_b21148 0.80 +1.0
893,575 - SM_b21148 0.83 +0.8
893,848 - -0.2
893,882 + SM_b21149 0.11 +0.3
893,949 + SM_b21149 0.18 -1.3
894,159 + SM_b21149 0.42 -0.8
894,160 - SM_b21149 0.42 +0.2
894,160 - SM_b21149 0.42 -2.5
894,160 - SM_b21149 0.42 +0.1
894,162 - SM_b21149 0.42 -0.1
894,306 + SM_b21149 0.59 +0.7
894,307 - SM_b21149 0.59 +0.1
894,307 - SM_b21149 0.59 +0.9
894,307 - SM_b21149 0.59 -0.2
894,345 + SM_b21149 0.63 -0.7
894,346 - SM_b21149 0.63 -0.9
894,381 + SM_b21149 0.67 -0.4
894,382 - SM_b21149 0.67 -0.1
894,538 - SM_b21149 0.85 -0.2
894,538 - SM_b21149 0.85 +0.1
894,599 + -0.9
894,627 + -1.2
894,627 + -0.2
894,704 + -1.0
894,722 + +0.5
894,722 + +0.2
894,722 + -0.8
894,722 + +0.1
894,722 + -0.6

Or see this region's nucleotide sequence