Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21144 and SM_b21145 are separated by 77 nucleotides SM_b21145 and SM_b21146 overlap by 4 nucleotides SM_b21146 and SM_b21147 overlap by 1 nucleotides
SM_b21144: SM_b21144 - choline uptake ABC transporter substrate-binding protein precursor, at 888,559 to 889,476
_b21144
SM_b21145: SM_b21145 - choline uptake ABC transporter permease, at 889,554 to 890,753
_b21145
SM_b21146: SM_b21146 - choline uptake ABC transporter ATP-binding protein, at 890,750 to 891,688
_b21146
SM_b21147: SM_b21147 - choline uptake ABC transporter permease, at 891,688 to 892,425
_b21147
Position (kb) 889
890
891 Strain fitness (log2 ratio) -2
-1
0
1
2 at 888.794 kb on - strand, within SM_b21144 at 888.802 kb on + strand, within SM_b21144 at 888.802 kb on + strand, within SM_b21144 at 888.802 kb on + strand, within SM_b21144 at 888.804 kb on + strand, within SM_b21144 at 888.804 kb on + strand, within SM_b21144 at 888.805 kb on - strand, within SM_b21144 at 888.872 kb on - strand, within SM_b21144 at 888.872 kb on - strand, within SM_b21144 at 888.872 kb on - strand, within SM_b21144 at 888.895 kb on + strand, within SM_b21144 at 888.896 kb on - strand, within SM_b21144 at 888.940 kb on - strand, within SM_b21144 at 889.213 kb on + strand, within SM_b21144 at 889.285 kb on + strand, within SM_b21144 at 889.286 kb on - strand, within SM_b21144 at 889.474 kb on + strand at 889.474 kb on + strand at 889.475 kb on - strand at 889.475 kb on - strand at 889.506 kb on + strand at 889.738 kb on - strand, within SM_b21145 at 890.080 kb on - strand, within SM_b21145 at 890.376 kb on + strand, within SM_b21145 at 890.376 kb on + strand, within SM_b21145 at 890.377 kb on - strand, within SM_b21145 at 890.377 kb on - strand, within SM_b21145 at 890.681 kb on + strand at 890.770 kb on - strand at 890.780 kb on + strand at 890.780 kb on + strand at 890.830 kb on + strand at 890.929 kb on - strand, within SM_b21146 at 890.929 kb on - strand, within SM_b21146 at 890.984 kb on + strand, within SM_b21146 at 891.143 kb on + strand, within SM_b21146 at 891.216 kb on + strand, within SM_b21146 at 891.217 kb on - strand, within SM_b21146 at 891.398 kb on + strand, within SM_b21146 at 891.398 kb on + strand, within SM_b21146 at 891.398 kb on + strand, within SM_b21146 at 891.399 kb on - strand, within SM_b21146 at 891.399 kb on - strand, within SM_b21146
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 888,794 - SM_b21144 0.26 -0.5 888,802 + SM_b21144 0.26 -0.3 888,802 + SM_b21144 0.26 +0.8 888,802 + SM_b21144 0.26 -0.2 888,804 + SM_b21144 0.27 +1.1 888,804 + SM_b21144 0.27 -1.4 888,805 - SM_b21144 0.27 +1.0 888,872 - SM_b21144 0.34 +1.2 888,872 - SM_b21144 0.34 +0.4 888,872 - SM_b21144 0.34 -0.4 888,895 + SM_b21144 0.37 +0.6 888,896 - SM_b21144 0.37 -0.3 888,940 - SM_b21144 0.42 +0.1 889,213 + SM_b21144 0.71 +0.9 889,285 + SM_b21144 0.79 +0.4 889,286 - SM_b21144 0.79 -0.3 889,474 + +0.5 889,474 + -0.6 889,475 - +0.3 889,475 - +1.9 889,506 + +1.5 889,738 - SM_b21145 0.15 +0.4 890,080 - SM_b21145 0.44 +0.4 890,376 + SM_b21145 0.69 +0.0 890,376 + SM_b21145 0.69 -0.3 890,377 - SM_b21145 0.69 +1.5 890,377 - SM_b21145 0.69 +0.5 890,681 + +2.1 890,770 - -1.2 890,780 + +0.2 890,780 + -0.3 890,830 + +0.1 890,929 - SM_b21146 0.19 -0.7 890,929 - SM_b21146 0.19 -0.5 890,984 + SM_b21146 0.25 +0.6 891,143 + SM_b21146 0.42 -0.3 891,216 + SM_b21146 0.50 -0.8 891,217 - SM_b21146 0.50 -2.0 891,398 + SM_b21146 0.69 -1.4 891,398 + SM_b21146 0.69 -0.4 891,398 + SM_b21146 0.69 -0.1 891,399 - SM_b21146 0.69 +0.2 891,399 - SM_b21146 0.69 -0.4
Or see this region's nucleotide sequence