Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21134

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21133 and SM_b21134 are separated by 264 nucleotidesSM_b21134 and SM_b21135 are separated by 156 nucleotides SM_b21133: SM_b21133 - sulfate ABC transporter substrate-binding protein, at 771,891 to 772,916 _b21133 SM_b21134: SM_b21134 - amino acid processing enzyme, low specificity D-threonine aldolase, at 773,181 to 774,239 _b21134 SM_b21135: SM_b21135 - amino acid ABC transporter substrate-binding protein, at 774,396 to 775,238 _b21135 Position (kb) 773 774 775Strain fitness (log2 ratio) -2 -1 0 1 2at 772.240 kb on + strand, within SM_b21133at 772.241 kb on - strand, within SM_b21133at 772.266 kb on + strand, within SM_b21133at 772.266 kb on + strand, within SM_b21133at 772.266 kb on + strand, within SM_b21133at 772.266 kb on + strand, within SM_b21133at 772.266 kb on + strand, within SM_b21133at 772.267 kb on - strand, within SM_b21133at 772.357 kb on + strand, within SM_b21133at 772.357 kb on + strand, within SM_b21133at 772.357 kb on + strand, within SM_b21133at 772.386 kb on - strand, within SM_b21133at 772.552 kb on + strand, within SM_b21133at 772.553 kb on - strand, within SM_b21133at 772.783 kb on + strand, within SM_b21133at 772.784 kb on - strand, within SM_b21133at 772.784 kb on - strand, within SM_b21133at 772.784 kb on - strand, within SM_b21133at 772.804 kb on + strand, within SM_b21133at 772.804 kb on + strand, within SM_b21133at 772.904 kb on + strandat 772.904 kb on + strandat 772.905 kb on - strandat 772.979 kb on - strandat 772.987 kb on + strandat 772.988 kb on - strandat 773.080 kb on - strandat 773.116 kb on + strandat 773.145 kb on + strandat 773.145 kb on + strandat 773.145 kb on + strandat 773.146 kb on - strandat 773.372 kb on + strand, within SM_b21134at 773.376 kb on + strand, within SM_b21134at 773.376 kb on + strand, within SM_b21134at 773.377 kb on - strand, within SM_b21134at 773.377 kb on - strand, within SM_b21134at 773.377 kb on - strand, within SM_b21134at 773.377 kb on - strand, within SM_b21134at 773.377 kb on - strand, within SM_b21134at 773.377 kb on - strand, within SM_b21134at 773.419 kb on - strand, within SM_b21134at 773.559 kb on - strand, within SM_b21134at 773.560 kb on + strand, within SM_b21134at 773.560 kb on + strand, within SM_b21134at 773.561 kb on - strand, within SM_b21134at 773.561 kb on - strand, within SM_b21134at 773.561 kb on - strand, within SM_b21134at 773.566 kb on + strand, within SM_b21134at 773.566 kb on + strand, within SM_b21134at 773.567 kb on - strand, within SM_b21134at 773.567 kb on - strand, within SM_b21134at 773.567 kb on - strand, within SM_b21134at 773.570 kb on + strand, within SM_b21134at 773.570 kb on + strand, within SM_b21134at 773.571 kb on - strand, within SM_b21134at 773.571 kb on - strand, within SM_b21134at 773.618 kb on + strand, within SM_b21134at 773.639 kb on + strand, within SM_b21134at 773.639 kb on + strand, within SM_b21134at 773.639 kb on + strand, within SM_b21134at 773.640 kb on - strand, within SM_b21134at 773.640 kb on - strand, within SM_b21134at 773.640 kb on - strand, within SM_b21134at 773.640 kb on - strand, within SM_b21134at 773.642 kb on + strand, within SM_b21134at 773.732 kb on - strand, within SM_b21134at 773.732 kb on - strand, within SM_b21134at 773.732 kb on - strand, within SM_b21134at 773.989 kb on + strand, within SM_b21134at 773.989 kb on + strand, within SM_b21134at 773.989 kb on + strand, within SM_b21134at 773.989 kb on + strand, within SM_b21134at 773.990 kb on - strand, within SM_b21134at 773.990 kb on - strand, within SM_b21134at 773.990 kb on - strand, within SM_b21134at 774.160 kb on + strandat 774.161 kb on - strandat 774.280 kb on - strandat 774.300 kb on + strandat 774.301 kb on - strandat 774.762 kb on + strand, within SM_b21135at 774.763 kb on - strand, within SM_b21135at 774.766 kb on - strand, within SM_b21135at 774.807 kb on + strand, within SM_b21135at 774.807 kb on + strand, within SM_b21135at 774.817 kb on - strand, within SM_b21135at 774.873 kb on + strand, within SM_b21135at 774.873 kb on + strand, within SM_b21135at 774.924 kb on + strand, within SM_b21135at 774.924 kb on + strand, within SM_b21135at 774.945 kb on + strand, within SM_b21135at 774.983 kb on + strand, within SM_b21135at 775.009 kb on - strand, within SM_b21135at 775.009 kb on - strand, within SM_b21135at 775.033 kb on - strand, within SM_b21135at 775.034 kb on + strand, within SM_b21135at 775.034 kb on + strand, within SM_b21135at 775.048 kb on - strand, within SM_b21135at 775.068 kb on + strand, within SM_b21135at 775.068 kb on + strand, within SM_b21135at 775.069 kb on - strand, within SM_b21135at 775.069 kb on - strand, within SM_b21135at 775.069 kb on - strand, within SM_b21135at 775.161 kb on + strandat 775.161 kb on + strandat 775.162 kb on - strandat 775.230 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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772,240 + SM_b21133 0.34 +1.0
772,241 - SM_b21133 0.34 -1.2
772,266 + SM_b21133 0.37 -0.3
772,266 + SM_b21133 0.37 +0.4
772,266 + SM_b21133 0.37 +0.3
772,266 + SM_b21133 0.37 +0.9
772,266 + SM_b21133 0.37 +0.9
772,267 - SM_b21133 0.37 -0.8
772,357 + SM_b21133 0.45 +1.0
772,357 + SM_b21133 0.45 +0.5
772,357 + SM_b21133 0.45 +0.0
772,386 - SM_b21133 0.48 -0.2
772,552 + SM_b21133 0.64 +1.0
772,553 - SM_b21133 0.65 +0.0
772,783 + SM_b21133 0.87 -1.2
772,784 - SM_b21133 0.87 -0.4
772,784 - SM_b21133 0.87 -1.7
772,784 - SM_b21133 0.87 +0.0
772,804 + SM_b21133 0.89 +0.0
772,804 + SM_b21133 0.89 +0.3
772,904 + +0.3
772,904 + +0.2
772,905 - -0.0
772,979 - -0.0
772,987 + +1.1
772,988 - -0.7
773,080 - -0.7
773,116 + +1.3
773,145 + -1.3
773,145 + -0.0
773,145 + +0.3
773,146 - +1.8
773,372 + SM_b21134 0.18 -0.1
773,376 + SM_b21134 0.18 -1.3
773,376 + SM_b21134 0.18 -2.6
773,377 - SM_b21134 0.19 -1.8
773,377 - SM_b21134 0.19 +0.1
773,377 - SM_b21134 0.19 -0.4
773,377 - SM_b21134 0.19 +0.0
773,377 - SM_b21134 0.19 +0.1
773,377 - SM_b21134 0.19 -1.1
773,419 - SM_b21134 0.22 -0.0
773,559 - SM_b21134 0.36 -1.0
773,560 + SM_b21134 0.36 -0.6
773,560 + SM_b21134 0.36 -1.4
773,561 - SM_b21134 0.36 +0.4
773,561 - SM_b21134 0.36 +0.5
773,561 - SM_b21134 0.36 -0.9
773,566 + SM_b21134 0.36 +0.1
773,566 + SM_b21134 0.36 -0.0
773,567 - SM_b21134 0.36 +0.0
773,567 - SM_b21134 0.36 -0.6
773,567 - SM_b21134 0.36 -0.3
773,570 + SM_b21134 0.37 +0.4
773,570 + SM_b21134 0.37 -0.8
773,571 - SM_b21134 0.37 +0.1
773,571 - SM_b21134 0.37 +0.3
773,618 + SM_b21134 0.41 -0.4
773,639 + SM_b21134 0.43 -0.4
773,639 + SM_b21134 0.43 -0.2
773,639 + SM_b21134 0.43 -1.1
773,640 - SM_b21134 0.43 -0.6
773,640 - SM_b21134 0.43 +0.3
773,640 - SM_b21134 0.43 -1.0
773,640 - SM_b21134 0.43 -0.9
773,642 + SM_b21134 0.44 -0.0
773,732 - SM_b21134 0.52 -0.4
773,732 - SM_b21134 0.52 -0.5
773,732 - SM_b21134 0.52 +0.7
773,989 + SM_b21134 0.76 +0.5
773,989 + SM_b21134 0.76 -0.8
773,989 + SM_b21134 0.76 -0.5
773,989 + SM_b21134 0.76 -0.4
773,990 - SM_b21134 0.76 -1.4
773,990 - SM_b21134 0.76 -0.2
773,990 - SM_b21134 0.76 +0.3
774,160 + -0.2
774,161 - -1.2
774,280 - +0.3
774,300 + -0.0
774,301 - -1.6
774,762 + SM_b21135 0.43 +0.5
774,763 - SM_b21135 0.44 -1.5
774,766 - SM_b21135 0.44 +0.7
774,807 + SM_b21135 0.49 +0.1
774,807 + SM_b21135 0.49 -0.2
774,817 - SM_b21135 0.50 -0.6
774,873 + SM_b21135 0.57 -0.4
774,873 + SM_b21135 0.57 -0.2
774,924 + SM_b21135 0.63 +0.5
774,924 + SM_b21135 0.63 +0.1
774,945 + SM_b21135 0.65 -0.7
774,983 + SM_b21135 0.70 -0.1
775,009 - SM_b21135 0.73 +1.2
775,009 - SM_b21135 0.73 -0.9
775,033 - SM_b21135 0.76 -0.3
775,034 + SM_b21135 0.76 -1.1
775,034 + SM_b21135 0.76 -0.2
775,048 - SM_b21135 0.77 -1.0
775,068 + SM_b21135 0.80 -1.6
775,068 + SM_b21135 0.80 +0.5
775,069 - SM_b21135 0.80 -0.9
775,069 - SM_b21135 0.80 +0.2
775,069 - SM_b21135 0.80 +0.1
775,161 + +0.4
775,161 + +1.1
775,162 - +0.5
775,230 + -0.5

Or see this region's nucleotide sequence