Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21100 and SM_b21101 are separated by 257 nucleotides SM_b21101 and SM_b21102 are separated by 50 nucleotides
SM_b21100: SM_b21100 - polysaccharide deacetylase, at 742,000 to 742,878
_b21100
SM_b21101: SM_b21101 - L-fucono-1,5-lactonase; D-arabinolactonase <small>(from data)</small>, at 743,136 to 743,972
_b21101
SM_b21102: SM_b21102 - transcriptional regulator, at 744,023 to 744,805
_b21102
Position (kb) 743
744 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 742.178 kb on - strand, within SM_b21100 at 742.291 kb on - strand, within SM_b21100 at 742.478 kb on - strand, within SM_b21100 at 742.478 kb on - strand, within SM_b21100 at 742.887 kb on - strand at 742.915 kb on + strand at 742.945 kb on + strand at 742.946 kb on - strand at 742.976 kb on + strand at 742.976 kb on + strand at 742.976 kb on + strand at 742.977 kb on - strand at 743.061 kb on + strand at 743.061 kb on + strand at 743.061 kb on + strand at 743.134 kb on + strand at 743.134 kb on + strand at 743.135 kb on - strand at 743.327 kb on - strand, within SM_b21101 at 743.327 kb on - strand, within SM_b21101 at 743.366 kb on - strand, within SM_b21101 at 743.423 kb on + strand, within SM_b21101 at 743.424 kb on - strand, within SM_b21101 at 743.457 kb on + strand, within SM_b21101 at 743.457 kb on + strand, within SM_b21101 at 743.458 kb on - strand, within SM_b21101 at 743.458 kb on - strand, within SM_b21101 at 743.522 kb on + strand, within SM_b21101 at 743.522 kb on + strand, within SM_b21101 at 743.693 kb on - strand, within SM_b21101 at 743.826 kb on - strand, within SM_b21101 at 743.869 kb on + strand, within SM_b21101 at 743.878 kb on + strand, within SM_b21101 at 743.923 kb on + strand at 743.924 kb on - strand at 744.136 kb on + strand, within SM_b21102 at 744.136 kb on + strand, within SM_b21102 at 744.136 kb on + strand, within SM_b21102 at 744.136 kb on + strand, within SM_b21102 at 744.136 kb on + strand, within SM_b21102 at 744.137 kb on - strand, within SM_b21102 at 744.137 kb on - strand, within SM_b21102 at 744.137 kb on - strand, within SM_b21102 at 744.138 kb on + strand, within SM_b21102 at 744.138 kb on + strand, within SM_b21102 at 744.138 kb on + strand, within SM_b21102 at 744.138 kb on + strand, within SM_b21102 at 744.138 kb on + strand, within SM_b21102 at 744.138 kb on + strand, within SM_b21102 at 744.201 kb on + strand, within SM_b21102 at 744.202 kb on - strand, within SM_b21102 at 744.202 kb on - strand, within SM_b21102 at 744.202 kb on - strand, within SM_b21102 at 744.238 kb on - strand, within SM_b21102 at 744.270 kb on + strand, within SM_b21102 at 744.270 kb on + strand, within SM_b21102 at 744.271 kb on - strand, within SM_b21102 at 744.395 kb on - strand, within SM_b21102 at 744.603 kb on + strand, within SM_b21102 at 744.630 kb on + strand, within SM_b21102 at 744.630 kb on + strand, within SM_b21102 at 744.631 kb on - strand, within SM_b21102 at 744.970 kb on - strand at 744.970 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 742,178 - SM_b21100 0.20 +1.8 742,291 - SM_b21100 0.33 -1.8 742,478 - SM_b21100 0.54 -0.8 742,478 - SM_b21100 0.54 +0.3 742,887 - -0.1 742,915 + -0.2 742,945 + +1.1 742,946 - -1.2 742,976 + -0.1 742,976 + +0.0 742,976 + -0.6 742,977 - -3.2 743,061 + -0.9 743,061 + -0.6 743,061 + -0.5 743,134 + -0.4 743,134 + +1.1 743,135 - -0.3 743,327 - SM_b21101 0.23 -0.5 743,327 - SM_b21101 0.23 -0.2 743,366 - SM_b21101 0.27 -1.4 743,423 + SM_b21101 0.34 +0.3 743,424 - SM_b21101 0.34 -1.8 743,457 + SM_b21101 0.38 -0.1 743,457 + SM_b21101 0.38 -0.6 743,458 - SM_b21101 0.38 +0.4 743,458 - SM_b21101 0.38 +0.1 743,522 + SM_b21101 0.46 -0.8 743,522 + SM_b21101 0.46 -1.4 743,693 - SM_b21101 0.67 +0.1 743,826 - SM_b21101 0.82 -0.4 743,869 + SM_b21101 0.88 -2.1 743,878 + SM_b21101 0.89 +0.2 743,923 + -0.7 743,924 - +1.2 744,136 + SM_b21102 0.14 -3.0 744,136 + SM_b21102 0.14 -0.0 744,136 + SM_b21102 0.14 +0.1 744,136 + SM_b21102 0.14 +0.6 744,136 + SM_b21102 0.14 +0.3 744,137 - SM_b21102 0.15 -0.2 744,137 - SM_b21102 0.15 +0.3 744,137 - SM_b21102 0.15 +1.2 744,138 + SM_b21102 0.15 -0.0 744,138 + SM_b21102 0.15 +0.5 744,138 + SM_b21102 0.15 -0.1 744,138 + SM_b21102 0.15 +1.3 744,138 + SM_b21102 0.15 -1.1 744,138 + SM_b21102 0.15 -0.2 744,201 + SM_b21102 0.23 +0.1 744,202 - SM_b21102 0.23 +0.3 744,202 - SM_b21102 0.23 +0.9 744,202 - SM_b21102 0.23 -0.4 744,238 - SM_b21102 0.27 +1.3 744,270 + SM_b21102 0.32 +1.0 744,270 + SM_b21102 0.32 -0.4 744,271 - SM_b21102 0.32 +0.2 744,395 - SM_b21102 0.48 -0.4 744,603 + SM_b21102 0.74 +0.7 744,630 + SM_b21102 0.78 +3.1 744,630 + SM_b21102 0.78 +1.2 744,631 - SM_b21102 0.78 -1.4 744,970 - -0.2 744,970 - -1.5
Or see this region's nucleotide sequence