Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21071 and SM_b21072 are separated by 44 nucleotides SM_b21072 and SM_b21073 are separated by 427 nucleotides SM_b21073 and SM_b21074 are separated by 71 nucleotides
SM_b21071: SM_b21071 - UDP-phosphate galactosephosphotransferase, at 708,086 to 708,736
_b21071
SM_b21072: SM_b21072 - hypothetical protein, at 708,781 to 709,035
_b21072
SM_b21073: SM_b21073 - OMA family outer membrane saccharide export protein, at 709,463 to 710,830
_b21073
SM_b21074: SM_b21074 - glycosyltransferase, at 710,902 to 711,801
_b21074
Position (kb) 709
710
711 Strain fitness (log2 ratio) -2
-1
0
1
2 at 708.473 kb on - strand, within SM_b21071 at 708.597 kb on + strand, within SM_b21071 at 708.597 kb on + strand, within SM_b21071 at 708.597 kb on + strand, within SM_b21071 at 708.598 kb on - strand, within SM_b21071 at 708.598 kb on - strand, within SM_b21071 at 708.598 kb on - strand, within SM_b21071 at 708.598 kb on - strand, within SM_b21071 at 708.620 kb on + strand, within SM_b21071 at 708.621 kb on - strand, within SM_b21071 at 708.650 kb on + strand, within SM_b21071 at 708.651 kb on - strand, within SM_b21071 at 708.651 kb on - strand, within SM_b21071 at 708.651 kb on - strand, within SM_b21071 at 708.655 kb on - strand, within SM_b21071 at 708.695 kb on - strand at 708.734 kb on + strand at 708.734 kb on + strand at 708.734 kb on + strand at 708.755 kb on + strand at 708.755 kb on + strand at 708.756 kb on - strand at 708.845 kb on + strand, within SM_b21072 at 708.846 kb on - strand, within SM_b21072 at 708.846 kb on - strand, within SM_b21072 at 708.846 kb on - strand, within SM_b21072 at 708.849 kb on + strand, within SM_b21072 at 708.850 kb on - strand, within SM_b21072 at 708.856 kb on + strand, within SM_b21072 at 708.856 kb on + strand, within SM_b21072 at 708.856 kb on + strand, within SM_b21072 at 708.872 kb on + strand, within SM_b21072 at 708.873 kb on - strand, within SM_b21072 at 708.873 kb on - strand, within SM_b21072 at 709.035 kb on + strand at 709.147 kb on + strand at 709.178 kb on + strand at 709.179 kb on - strand at 709.179 kb on - strand at 709.179 kb on - strand at 709.179 kb on - strand at 709.179 kb on - strand at 709.179 kb on - strand at 709.291 kb on + strand at 709.292 kb on - strand at 709.382 kb on + strand at 709.382 kb on + strand at 709.382 kb on + strand at 709.382 kb on + strand at 709.382 kb on + strand at 709.382 kb on + strand at 709.383 kb on - strand at 709.383 kb on - strand at 709.390 kb on + strand at 709.390 kb on + strand at 709.424 kb on + strand at 709.444 kb on + strand at 709.444 kb on + strand at 709.444 kb on + strand at 709.445 kb on - strand at 709.445 kb on - strand at 709.452 kb on + strand at 709.453 kb on - strand at 709.453 kb on - strand at 709.465 kb on - strand at 709.662 kb on + strand, within SM_b21073 at 709.662 kb on + strand, within SM_b21073 at 709.737 kb on - strand, within SM_b21073 at 709.821 kb on + strand, within SM_b21073 at 709.822 kb on - strand, within SM_b21073 at 709.861 kb on + strand, within SM_b21073 at 709.901 kb on + strand, within SM_b21073 at 709.918 kb on - strand, within SM_b21073 at 709.918 kb on - strand, within SM_b21073 at 709.979 kb on + strand, within SM_b21073 at 709.980 kb on - strand, within SM_b21073 at 709.988 kb on + strand, within SM_b21073 at 709.988 kb on + strand, within SM_b21073 at 709.988 kb on + strand, within SM_b21073 at 709.988 kb on + strand, within SM_b21073 at 709.988 kb on + strand, within SM_b21073 at 709.989 kb on - strand, within SM_b21073 at 709.989 kb on - strand, within SM_b21073 at 709.989 kb on - strand, within SM_b21073 at 710.058 kb on - strand, within SM_b21073 at 710.114 kb on + strand, within SM_b21073 at 710.230 kb on + strand, within SM_b21073 at 710.231 kb on - strand, within SM_b21073 at 710.231 kb on - strand, within SM_b21073 at 710.376 kb on - strand, within SM_b21073 at 710.445 kb on + strand, within SM_b21073 at 710.445 kb on + strand, within SM_b21073 at 710.445 kb on + strand, within SM_b21073 at 710.446 kb on - strand, within SM_b21073 at 710.446 kb on - strand, within SM_b21073 at 710.446 kb on - strand, within SM_b21073 at 710.446 kb on - strand, within SM_b21073 at 710.446 kb on - strand, within SM_b21073 at 710.446 kb on - strand, within SM_b21073 at 710.503 kb on + strand, within SM_b21073 at 710.504 kb on - strand, within SM_b21073 at 710.504 kb on - strand, within SM_b21073 at 710.518 kb on + strand, within SM_b21073 at 710.533 kb on - strand, within SM_b21073 at 710.620 kb on + strand, within SM_b21073 at 710.647 kb on + strand, within SM_b21073 at 710.687 kb on + strand, within SM_b21073 at 710.688 kb on - strand, within SM_b21073 at 710.712 kb on + strand at 710.712 kb on + strand at 710.748 kb on - strand at 710.748 kb on - strand at 710.803 kb on + strand at 710.804 kb on - strand at 710.830 kb on + strand at 710.903 kb on + strand at 710.903 kb on + strand at 710.911 kb on + strand at 710.925 kb on - strand at 710.966 kb on - strand at 710.966 kb on - strand at 710.968 kb on - strand at 711.002 kb on + strand, within SM_b21074 at 711.002 kb on + strand, within SM_b21074 at 711.002 kb on + strand, within SM_b21074 at 711.003 kb on - strand, within SM_b21074 at 711.003 kb on - strand, within SM_b21074 at 711.003 kb on - strand, within SM_b21074 at 711.053 kb on - strand, within SM_b21074 at 711.053 kb on - strand, within SM_b21074 at 711.072 kb on + strand, within SM_b21074 at 711.073 kb on - strand, within SM_b21074 at 711.101 kb on + strand, within SM_b21074 at 711.323 kb on + strand, within SM_b21074 at 711.324 kb on - strand, within SM_b21074 at 711.324 kb on - strand, within SM_b21074 at 711.513 kb on + strand, within SM_b21074 at 711.610 kb on + strand, within SM_b21074 at 711.610 kb on + strand, within SM_b21074 at 711.610 kb on + strand, within SM_b21074 at 711.610 kb on + strand, within SM_b21074 at 711.611 kb on - strand, within SM_b21074 at 711.611 kb on - strand, within SM_b21074 at 711.611 kb on - strand, within SM_b21074 at 711.611 kb on - strand, within SM_b21074 at 711.631 kb on + strand, within SM_b21074 at 711.785 kb on - strand at 711.785 kb on - strand at 711.808 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 708,473 - SM_b21071 0.59 +1.1 708,597 + SM_b21071 0.78 -0.0 708,597 + SM_b21071 0.78 -0.6 708,597 + SM_b21071 0.78 -0.1 708,598 - SM_b21071 0.79 -0.4 708,598 - SM_b21071 0.79 -0.7 708,598 - SM_b21071 0.79 +1.1 708,598 - SM_b21071 0.79 +1.2 708,620 + SM_b21071 0.82 -0.5 708,621 - SM_b21071 0.82 +0.7 708,650 + SM_b21071 0.87 -1.6 708,651 - SM_b21071 0.87 -0.3 708,651 - SM_b21071 0.87 -0.2 708,651 - SM_b21071 0.87 +2.3 708,655 - SM_b21071 0.87 -0.0 708,695 - -0.9 708,734 + -0.5 708,734 + -1.0 708,734 + -0.7 708,755 + +1.1 708,755 + +1.1 708,756 - +0.3 708,845 + SM_b21072 0.25 +0.7 708,846 - SM_b21072 0.25 +0.0 708,846 - SM_b21072 0.25 +0.3 708,846 - SM_b21072 0.25 -0.2 708,849 + SM_b21072 0.27 -0.3 708,850 - SM_b21072 0.27 -0.8 708,856 + SM_b21072 0.29 -0.9 708,856 + SM_b21072 0.29 -1.8 708,856 + SM_b21072 0.29 -0.0 708,872 + SM_b21072 0.36 -2.4 708,873 - SM_b21072 0.36 -0.1 708,873 - SM_b21072 0.36 -0.3 709,035 + -0.5 709,147 + +0.0 709,178 + -0.2 709,179 - +0.1 709,179 - -0.6 709,179 - -0.1 709,179 - -0.0 709,179 - +0.9 709,179 - +0.4 709,291 + -0.9 709,292 - +2.0 709,382 + -0.9 709,382 + +0.3 709,382 + +0.1 709,382 + -0.2 709,382 + -0.3 709,382 + -0.4 709,383 - -0.1 709,383 - +0.2 709,390 + +0.1 709,390 + +0.7 709,424 + -0.1 709,444 + +0.3 709,444 + +1.1 709,444 + -0.1 709,445 - +0.3 709,445 - +0.1 709,452 + +0.9 709,453 - +0.1 709,453 - -0.0 709,465 - -0.3 709,662 + SM_b21073 0.15 +0.8 709,662 + SM_b21073 0.15 +0.3 709,737 - SM_b21073 0.20 -0.2 709,821 + SM_b21073 0.26 -0.2 709,822 - SM_b21073 0.26 -0.9 709,861 + SM_b21073 0.29 +0.1 709,901 + SM_b21073 0.32 -0.4 709,918 - SM_b21073 0.33 +0.6 709,918 - SM_b21073 0.33 +1.1 709,979 + SM_b21073 0.38 -0.6 709,980 - SM_b21073 0.38 -0.3 709,988 + SM_b21073 0.38 -2.2 709,988 + SM_b21073 0.38 +0.3 709,988 + SM_b21073 0.38 +1.6 709,988 + SM_b21073 0.38 +0.6 709,988 + SM_b21073 0.38 +0.4 709,989 - SM_b21073 0.38 -1.4 709,989 - SM_b21073 0.38 -1.9 709,989 - SM_b21073 0.38 +0.6 710,058 - SM_b21073 0.43 -2.3 710,114 + SM_b21073 0.48 +0.0 710,230 + SM_b21073 0.56 -1.5 710,231 - SM_b21073 0.56 -0.1 710,231 - SM_b21073 0.56 +1.4 710,376 - SM_b21073 0.67 -1.3 710,445 + SM_b21073 0.72 -0.4 710,445 + SM_b21073 0.72 +1.1 710,445 + SM_b21073 0.72 +0.0 710,446 - SM_b21073 0.72 +0.1 710,446 - SM_b21073 0.72 -0.1 710,446 - SM_b21073 0.72 -0.4 710,446 - SM_b21073 0.72 +0.9 710,446 - SM_b21073 0.72 -0.9 710,446 - SM_b21073 0.72 -0.2 710,503 + SM_b21073 0.76 +0.2 710,504 - SM_b21073 0.76 +1.6 710,504 - SM_b21073 0.76 +0.3 710,518 + SM_b21073 0.77 +1.9 710,533 - SM_b21073 0.78 +1.1 710,620 + SM_b21073 0.85 +1.8 710,647 + SM_b21073 0.87 +0.2 710,687 + SM_b21073 0.89 -0.2 710,688 - SM_b21073 0.90 -0.2 710,712 + +1.8 710,712 + +1.1 710,748 - -0.9 710,748 - +0.0 710,803 + +0.8 710,804 - +0.8 710,830 + -1.0 710,903 + -1.4 710,903 + +0.6 710,911 + +0.3 710,925 - -0.2 710,966 - -0.4 710,966 - +0.9 710,968 - -0.2 711,002 + SM_b21074 0.11 -0.2 711,002 + SM_b21074 0.11 +1.2 711,002 + SM_b21074 0.11 -1.5 711,003 - SM_b21074 0.11 -1.3 711,003 - SM_b21074 0.11 +0.7 711,003 - SM_b21074 0.11 -1.9 711,053 - SM_b21074 0.17 +0.6 711,053 - SM_b21074 0.17 +2.1 711,072 + SM_b21074 0.19 -1.3 711,073 - SM_b21074 0.19 -1.7 711,101 + SM_b21074 0.22 -0.4 711,323 + SM_b21074 0.47 +0.1 711,324 - SM_b21074 0.47 +0.3 711,324 - SM_b21074 0.47 -0.3 711,513 + SM_b21074 0.68 +0.2 711,610 + SM_b21074 0.79 +0.2 711,610 + SM_b21074 0.79 -0.2 711,610 + SM_b21074 0.79 +0.4 711,610 + SM_b21074 0.79 +0.0 711,611 - SM_b21074 0.79 -1.4 711,611 - SM_b21074 0.79 -0.3 711,611 - SM_b21074 0.79 +0.5 711,611 - SM_b21074 0.79 -0.5 711,631 + SM_b21074 0.81 -0.5 711,785 - +0.3 711,785 - +0.2 711,808 + -0.1
Or see this region's nucleotide sequence