Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21018 and SM_b21019 overlap by 8 nucleotides SM_b21019 and SM_b21021 are separated by 225 nucleotides
SM_b21018: SM_b21018 - sugar ABC transporter permease, at 641,408 to 642,439
_b21018
SM_b21019: SM_b21019 - sugar ABC transporter ATP-binding protein, at 642,432 to 643,949
_b21019
SM_b21021: SM_b21021 - transcriptional regulator, at 644,175 to 645,122
_b21021
Position (kb) 642
643
644 Strain fitness (log2 ratio) -1
0
1
2 at 641.580 kb on + strand, within SM_b21018 at 641.626 kb on + strand, within SM_b21018 at 641.690 kb on + strand, within SM_b21018 at 641.690 kb on + strand, within SM_b21018 at 641.690 kb on + strand, within SM_b21018 at 641.691 kb on - strand, within SM_b21018 at 641.691 kb on - strand, within SM_b21018 at 641.831 kb on - strand, within SM_b21018 at 641.837 kb on + strand, within SM_b21018 at 641.880 kb on + strand, within SM_b21018 at 642.106 kb on - strand, within SM_b21018 at 642.106 kb on - strand, within SM_b21018 at 642.254 kb on - strand, within SM_b21018 at 642.277 kb on + strand, within SM_b21018 at 642.277 kb on + strand, within SM_b21018 at 642.278 kb on - strand, within SM_b21018 at 642.348 kb on + strand at 642.349 kb on - strand at 642.349 kb on - strand at 642.396 kb on - strand at 642.396 kb on - strand at 642.628 kb on + strand, within SM_b21019 at 642.815 kb on + strand, within SM_b21019 at 642.816 kb on - strand, within SM_b21019 at 642.816 kb on - strand, within SM_b21019 at 642.931 kb on + strand, within SM_b21019 at 642.954 kb on + strand, within SM_b21019 at 642.955 kb on - strand, within SM_b21019 at 643.112 kb on + strand, within SM_b21019 at 643.255 kb on + strand, within SM_b21019 at 643.255 kb on + strand, within SM_b21019 at 643.255 kb on + strand, within SM_b21019 at 643.256 kb on - strand, within SM_b21019 at 643.299 kb on + strand, within SM_b21019 at 643.446 kb on + strand, within SM_b21019 at 643.446 kb on + strand, within SM_b21019 at 643.447 kb on - strand, within SM_b21019 at 643.468 kb on - strand, within SM_b21019 at 643.468 kb on - strand, within SM_b21019 at 643.672 kb on + strand, within SM_b21019 at 643.748 kb on + strand, within SM_b21019 at 643.877 kb on - strand at 644.024 kb on - strand at 644.055 kb on + strand at 644.244 kb on + strand at 644.245 kb on - strand at 644.245 kb on - strand at 644.247 kb on + strand at 644.247 kb on + strand at 644.248 kb on - strand at 644.248 kb on - strand at 644.248 kb on - strand at 644.250 kb on + strand at 644.250 kb on + strand at 644.348 kb on + strand, within SM_b21021 at 644.360 kb on + strand, within SM_b21021 at 644.360 kb on + strand at 644.373 kb on + strand, within SM_b21021 at 644.374 kb on - strand, within SM_b21021 at 644.416 kb on - strand, within SM_b21021 at 644.433 kb on + strand, within SM_b21021 at 644.433 kb on + strand, within SM_b21021 at 644.601 kb on - strand, within SM_b21021 at 644.601 kb on - strand, within SM_b21021 at 644.609 kb on - strand, within SM_b21021 at 644.637 kb on + strand, within SM_b21021 at 644.637 kb on + strand, within SM_b21021 at 644.638 kb on - strand, within SM_b21021 at 644.638 kb on - strand, within SM_b21021 at 644.638 kb on - strand, within SM_b21021 at 644.638 kb on - strand, within SM_b21021 at 644.784 kb on + strand, within SM_b21021 at 644.785 kb on - strand, within SM_b21021 at 644.842 kb on - strand, within SM_b21021
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 641,580 + SM_b21018 0.17 -0.1 641,626 + SM_b21018 0.21 +0.3 641,690 + SM_b21018 0.27 +0.9 641,690 + SM_b21018 0.27 -0.4 641,690 + SM_b21018 0.27 -0.3 641,691 - SM_b21018 0.27 -0.4 641,691 - SM_b21018 0.27 -0.5 641,831 - SM_b21018 0.41 -0.2 641,837 + SM_b21018 0.42 +0.3 641,880 + SM_b21018 0.46 -0.9 642,106 - SM_b21018 0.68 -0.7 642,106 - SM_b21018 0.68 -0.3 642,254 - SM_b21018 0.82 -0.0 642,277 + SM_b21018 0.84 -0.5 642,277 + SM_b21018 0.84 -0.6 642,278 - SM_b21018 0.84 -0.8 642,348 + +0.1 642,349 - +0.6 642,349 - +0.8 642,396 - +0.2 642,396 - +0.4 642,628 + SM_b21019 0.13 -0.4 642,815 + SM_b21019 0.25 +0.2 642,816 - SM_b21019 0.25 +0.3 642,816 - SM_b21019 0.25 +1.0 642,931 + SM_b21019 0.33 -0.2 642,954 + SM_b21019 0.34 -0.7 642,955 - SM_b21019 0.34 +0.8 643,112 + SM_b21019 0.45 +0.1 643,255 + SM_b21019 0.54 -0.6 643,255 + SM_b21019 0.54 -0.0 643,255 + SM_b21019 0.54 -0.4 643,256 - SM_b21019 0.54 -0.7 643,299 + SM_b21019 0.57 -0.1 643,446 + SM_b21019 0.67 -0.1 643,446 + SM_b21019 0.67 +0.7 643,447 - SM_b21019 0.67 -0.6 643,468 - SM_b21019 0.68 +0.1 643,468 - SM_b21019 0.68 +0.1 643,672 + SM_b21019 0.82 -1.2 643,748 + SM_b21019 0.87 -0.5 643,877 - -1.0 644,024 - -0.1 644,055 + +0.3 644,244 + +1.6 644,245 - +0.0 644,245 - -1.2 644,247 + +2.6 644,247 + +0.5 644,248 - +0.0 644,248 - +0.1 644,248 - -0.8 644,250 + -1.4 644,250 + -0.4 644,348 + SM_b21021 0.18 +0.3 644,360 + SM_b21021 0.20 +2.1 644,360 + +1.7 644,373 + SM_b21021 0.21 -1.4 644,374 - SM_b21021 0.21 -0.2 644,416 - SM_b21021 0.25 +0.0 644,433 + SM_b21021 0.27 +1.0 644,433 + SM_b21021 0.27 -0.6 644,601 - SM_b21021 0.45 +1.4 644,601 - SM_b21021 0.45 +1.2 644,609 - SM_b21021 0.46 +1.3 644,637 + SM_b21021 0.49 -1.0 644,637 + SM_b21021 0.49 -0.0 644,638 - SM_b21021 0.49 +0.4 644,638 - SM_b21021 0.49 +0.2 644,638 - SM_b21021 0.49 +0.4 644,638 - SM_b21021 0.49 -1.4 644,784 + SM_b21021 0.64 +0.4 644,785 - SM_b21021 0.64 +0.6 644,842 - SM_b21021 0.70 +0.3
Or see this region's nucleotide sequence