Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21017 and SM_b21018 overlap by 4 nucleotides SM_b21018 and SM_b21019 overlap by 8 nucleotides
SM_b21017: SM_b21017 - sugar ABC transporter permease, at 640,398 to 641,411
_b21017
SM_b21018: SM_b21018 - sugar ABC transporter permease, at 641,408 to 642,439
_b21018
SM_b21019: SM_b21019 - sugar ABC transporter ATP-binding protein, at 642,432 to 643,949
_b21019
Position (kb) 641
642
643 Strain fitness (log2 ratio) -2
-1
0
1 at 640.630 kb on + strand, within SM_b21017 at 640.630 kb on + strand, within SM_b21017 at 640.630 kb on + strand, within SM_b21017 at 640.631 kb on - strand, within SM_b21017 at 640.714 kb on + strand, within SM_b21017 at 640.765 kb on + strand, within SM_b21017 at 640.765 kb on + strand, within SM_b21017 at 640.765 kb on + strand, within SM_b21017 at 640.766 kb on - strand, within SM_b21017 at 640.766 kb on - strand, within SM_b21017 at 641.070 kb on + strand, within SM_b21017 at 641.071 kb on - strand, within SM_b21017 at 641.164 kb on + strand, within SM_b21017 at 641.164 kb on + strand, within SM_b21017 at 641.165 kb on - strand, within SM_b21017 at 641.165 kb on - strand, within SM_b21017 at 641.196 kb on - strand, within SM_b21017 at 641.241 kb on + strand, within SM_b21017 at 641.312 kb on + strand at 641.580 kb on + strand, within SM_b21018 at 641.626 kb on + strand, within SM_b21018 at 641.690 kb on + strand, within SM_b21018 at 641.690 kb on + strand, within SM_b21018 at 641.690 kb on + strand, within SM_b21018 at 641.691 kb on - strand, within SM_b21018 at 641.691 kb on - strand, within SM_b21018 at 641.831 kb on - strand, within SM_b21018 at 641.837 kb on + strand, within SM_b21018 at 641.880 kb on + strand, within SM_b21018 at 642.106 kb on - strand, within SM_b21018 at 642.106 kb on - strand, within SM_b21018 at 642.254 kb on - strand, within SM_b21018 at 642.277 kb on + strand, within SM_b21018 at 642.277 kb on + strand, within SM_b21018 at 642.278 kb on - strand, within SM_b21018 at 642.348 kb on + strand at 642.349 kb on - strand at 642.349 kb on - strand at 642.396 kb on - strand at 642.396 kb on - strand at 642.628 kb on + strand, within SM_b21019 at 642.815 kb on + strand, within SM_b21019 at 642.816 kb on - strand, within SM_b21019 at 642.816 kb on - strand, within SM_b21019 at 642.931 kb on + strand, within SM_b21019 at 642.954 kb on + strand, within SM_b21019 at 642.955 kb on - strand, within SM_b21019 at 643.112 kb on + strand, within SM_b21019 at 643.255 kb on + strand, within SM_b21019 at 643.255 kb on + strand, within SM_b21019 at 643.255 kb on + strand, within SM_b21019 at 643.256 kb on - strand, within SM_b21019 at 643.299 kb on + strand, within SM_b21019
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 640,630 + SM_b21017 0.23 +0.5 640,630 + SM_b21017 0.23 -0.2 640,630 + SM_b21017 0.23 -2.1 640,631 - SM_b21017 0.23 +0.2 640,714 + SM_b21017 0.31 -0.2 640,765 + SM_b21017 0.36 -0.6 640,765 + SM_b21017 0.36 -1.0 640,765 + SM_b21017 0.36 -1.9 640,766 - SM_b21017 0.36 -0.5 640,766 - SM_b21017 0.36 -0.3 641,070 + SM_b21017 0.66 +0.2 641,071 - SM_b21017 0.66 -1.1 641,164 + SM_b21017 0.76 +1.4 641,164 + SM_b21017 0.76 +0.1 641,165 - SM_b21017 0.76 +1.3 641,165 - SM_b21017 0.76 -0.4 641,196 - SM_b21017 0.79 -0.3 641,241 + SM_b21017 0.83 +1.1 641,312 + -0.2 641,580 + SM_b21018 0.17 -0.1 641,626 + SM_b21018 0.21 +0.3 641,690 + SM_b21018 0.27 +0.9 641,690 + SM_b21018 0.27 -0.4 641,690 + SM_b21018 0.27 -0.3 641,691 - SM_b21018 0.27 -0.4 641,691 - SM_b21018 0.27 -0.5 641,831 - SM_b21018 0.41 -0.2 641,837 + SM_b21018 0.42 +0.3 641,880 + SM_b21018 0.46 -0.9 642,106 - SM_b21018 0.68 -0.7 642,106 - SM_b21018 0.68 -0.3 642,254 - SM_b21018 0.82 -0.0 642,277 + SM_b21018 0.84 -0.5 642,277 + SM_b21018 0.84 -0.6 642,278 - SM_b21018 0.84 -0.8 642,348 + +0.1 642,349 - +0.6 642,349 - +0.8 642,396 - +0.2 642,396 - +0.4 642,628 + SM_b21019 0.13 -0.4 642,815 + SM_b21019 0.25 +0.2 642,816 - SM_b21019 0.25 +0.3 642,816 - SM_b21019 0.25 +1.0 642,931 + SM_b21019 0.33 -0.2 642,954 + SM_b21019 0.34 -0.7 642,955 - SM_b21019 0.34 +0.8 643,112 + SM_b21019 0.45 +0.1 643,255 + SM_b21019 0.54 -0.6 643,255 + SM_b21019 0.54 -0.0 643,255 + SM_b21019 0.54 -0.4 643,256 - SM_b21019 0.54 -0.7 643,299 + SM_b21019 0.57 -0.1
Or see this region's nucleotide sequence