Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21010

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21009 and SM_b21010 are separated by 299 nucleotidesSM_b21010 and SM_b21011 are separated by 43 nucleotides SM_b21009: SM_b21009 - Glycerol kinase (EC 2.7.1.30) (from data), at 1,242,315 to 1,243,808 _b21009 SM_b21010: SM_b21010 - D-beta-hydroxybutyrate dehydrogenase, at 1,244,108 to 1,244,884 _b21010 SM_b21011: SM_b21011 - xanthine dehydrogenase, at 1,244,928 to 1,246,415 _b21011 Position (kb) 1244 1245Strain fitness (log2 ratio) -1 0 1at 1243.232 kb on + strand, within SM_b21009at 1243.237 kb on + strand, within SM_b21009at 1243.238 kb on - strand, within SM_b21009at 1243.238 kb on - strand, within SM_b21009at 1243.238 kb on - strand, within SM_b21009at 1243.238 kb on - strand, within SM_b21009at 1243.239 kb on + strand, within SM_b21009at 1243.240 kb on - strand, within SM_b21009at 1243.240 kb on - strand, within SM_b21009at 1243.320 kb on - strand, within SM_b21009at 1243.320 kb on - strand, within SM_b21009at 1243.593 kb on - strand, within SM_b21009at 1243.796 kb on + strandat 1243.796 kb on + strandat 1243.796 kb on + strandat 1243.797 kb on - strandat 1243.798 kb on + strandat 1243.799 kb on - strandat 1243.799 kb on - strandat 1243.808 kb on + strandat 1243.809 kb on - strandat 1243.809 kb on - strandat 1243.809 kb on - strandat 1243.809 kb on - strandat 1243.867 kb on + strandat 1243.868 kb on - strandat 1243.868 kb on - strandat 1243.928 kb on + strandat 1244.050 kb on - strandat 1244.564 kb on + strand, within SM_b21010at 1244.564 kb on + strand, within SM_b21010at 1244.564 kb on + strand, within SM_b21010at 1244.565 kb on - strand, within SM_b21010at 1244.584 kb on + strand, within SM_b21010at 1244.584 kb on + strand, within SM_b21010at 1244.584 kb on + strand, within SM_b21010at 1244.584 kb on + strandat 1244.584 kb on + strand, within SM_b21010at 1244.585 kb on - strand, within SM_b21010at 1244.585 kb on - strand, within SM_b21010at 1244.661 kb on - strand, within SM_b21010at 1244.692 kb on - strand, within SM_b21010at 1245.358 kb on + strand, within SM_b21011at 1245.559 kb on + strand, within SM_b21011at 1245.560 kb on - strand, within SM_b21011at 1245.761 kb on + strand, within SM_b21011at 1245.761 kb on + strand, within SM_b21011at 1245.761 kb on + strand, within SM_b21011at 1245.762 kb on - strand, within SM_b21011at 1245.762 kb on - strand, within SM_b21011at 1245.762 kb on - strand, within SM_b21011at 1245.792 kb on + strand, within SM_b21011at 1245.792 kb on + strand, within SM_b21011at 1245.792 kb on + strand, within SM_b21011at 1245.793 kb on - strand, within SM_b21011at 1245.866 kb on + strand, within SM_b21011

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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1,243,232 + SM_b21009 0.61 +1.2
1,243,237 + SM_b21009 0.62 -1.1
1,243,238 - SM_b21009 0.62 +0.2
1,243,238 - SM_b21009 0.62 +0.4
1,243,238 - SM_b21009 0.62 +0.4
1,243,238 - SM_b21009 0.62 -0.3
1,243,239 + SM_b21009 0.62 +0.7
1,243,240 - SM_b21009 0.62 +0.1
1,243,240 - SM_b21009 0.62 +0.0
1,243,320 - SM_b21009 0.67 +0.2
1,243,320 - SM_b21009 0.67 +0.9
1,243,593 - SM_b21009 0.86 -0.0
1,243,796 + +0.3
1,243,796 + -0.4
1,243,796 + +0.8
1,243,797 - -0.6
1,243,798 + +0.2
1,243,799 - +1.2
1,243,799 - +1.2
1,243,808 + -0.0
1,243,809 - -0.6
1,243,809 - +0.5
1,243,809 - +0.2
1,243,809 - -0.0
1,243,867 + -0.1
1,243,868 - -0.2
1,243,868 - -0.2
1,243,928 + +0.3
1,244,050 - -0.6
1,244,564 + SM_b21010 0.59 +0.5
1,244,564 + SM_b21010 0.59 +0.7
1,244,564 + SM_b21010 0.59 +0.2
1,244,565 - SM_b21010 0.59 -0.2
1,244,584 + SM_b21010 0.61 -0.4
1,244,584 + SM_b21010 0.61 +0.5
1,244,584 + SM_b21010 0.61 +0.1
1,244,584 + +1.7
1,244,584 + SM_b21010 0.61 +0.2
1,244,585 - SM_b21010 0.61 +0.5
1,244,585 - SM_b21010 0.61 -0.1
1,244,661 - SM_b21010 0.71 -1.0
1,244,692 - SM_b21010 0.75 -0.3
1,245,358 + SM_b21011 0.29 +0.6
1,245,559 + SM_b21011 0.42 -0.7
1,245,560 - SM_b21011 0.42 +0.5
1,245,761 + SM_b21011 0.56 -1.4
1,245,761 + SM_b21011 0.56 -0.4
1,245,761 + SM_b21011 0.56 -0.6
1,245,762 - SM_b21011 0.56 -0.3
1,245,762 - SM_b21011 0.56 -0.9
1,245,762 - SM_b21011 0.56 -0.7
1,245,792 + SM_b21011 0.58 +0.6
1,245,792 + SM_b21011 0.58 -0.8
1,245,792 + SM_b21011 0.58 -1.1
1,245,793 - SM_b21011 0.58 -1.0
1,245,866 + SM_b21011 0.63 +1.2

Or see this region's nucleotide sequence