Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21009 and SM_b21010 are separated by 299 nucleotides SM_b21010 and SM_b21011 are separated by 43 nucleotides
SM_b21009: SM_b21009 - Glycerol kinase (EC 2.7.1.30) (from data) , at 1,242,315 to 1,243,808
_b21009
SM_b21010: SM_b21010 - D-beta-hydroxybutyrate dehydrogenase, at 1,244,108 to 1,244,884
_b21010
SM_b21011: SM_b21011 - xanthine dehydrogenase, at 1,244,928 to 1,246,415
_b21011
Position (kb)
1244
1245 Strain fitness (log2 ratio)
-1
0
1 at 1243.232 kb on + strand, within SM_b21009 at 1243.237 kb on + strand, within SM_b21009 at 1243.238 kb on - strand, within SM_b21009 at 1243.238 kb on - strand, within SM_b21009 at 1243.238 kb on - strand, within SM_b21009 at 1243.238 kb on - strand, within SM_b21009 at 1243.239 kb on + strand, within SM_b21009 at 1243.240 kb on - strand, within SM_b21009 at 1243.240 kb on - strand, within SM_b21009 at 1243.320 kb on - strand, within SM_b21009 at 1243.320 kb on - strand, within SM_b21009 at 1243.593 kb on - strand, within SM_b21009 at 1243.796 kb on + strand at 1243.796 kb on + strand at 1243.796 kb on + strand at 1243.797 kb on - strand at 1243.798 kb on + strand at 1243.799 kb on - strand at 1243.799 kb on - strand at 1243.808 kb on + strand at 1243.809 kb on - strand at 1243.809 kb on - strand at 1243.809 kb on - strand at 1243.809 kb on - strand at 1243.867 kb on + strand at 1243.868 kb on - strand at 1243.868 kb on - strand at 1243.928 kb on + strand at 1244.050 kb on - strand at 1244.564 kb on + strand, within SM_b21010 at 1244.564 kb on + strand, within SM_b21010 at 1244.564 kb on + strand, within SM_b21010 at 1244.565 kb on - strand, within SM_b21010 at 1244.584 kb on + strand, within SM_b21010 at 1244.584 kb on + strand, within SM_b21010 at 1244.584 kb on + strand, within SM_b21010 at 1244.584 kb on + strand at 1244.584 kb on + strand, within SM_b21010 at 1244.585 kb on - strand, within SM_b21010 at 1244.585 kb on - strand, within SM_b21010 at 1244.661 kb on - strand, within SM_b21010 at 1244.692 kb on - strand, within SM_b21010 at 1245.358 kb on + strand, within SM_b21011 at 1245.559 kb on + strand, within SM_b21011 at 1245.560 kb on - strand, within SM_b21011 at 1245.761 kb on + strand, within SM_b21011 at 1245.761 kb on + strand, within SM_b21011 at 1245.761 kb on + strand, within SM_b21011 at 1245.762 kb on - strand, within SM_b21011 at 1245.762 kb on - strand, within SM_b21011 at 1245.762 kb on - strand, within SM_b21011 at 1245.792 kb on + strand, within SM_b21011 at 1245.792 kb on + strand, within SM_b21011 at 1245.792 kb on + strand, within SM_b21011 at 1245.793 kb on - strand, within SM_b21011 at 1245.866 kb on + strand, within SM_b21011
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 1,243,232 + SM_b21009 0.61 +1.2 1,243,237 + SM_b21009 0.62 -1.1 1,243,238 - SM_b21009 0.62 +0.2 1,243,238 - SM_b21009 0.62 +0.4 1,243,238 - SM_b21009 0.62 +0.4 1,243,238 - SM_b21009 0.62 -0.3 1,243,239 + SM_b21009 0.62 +0.7 1,243,240 - SM_b21009 0.62 +0.1 1,243,240 - SM_b21009 0.62 +0.0 1,243,320 - SM_b21009 0.67 +0.2 1,243,320 - SM_b21009 0.67 +0.9 1,243,593 - SM_b21009 0.86 -0.0 1,243,796 + +0.3 1,243,796 + -0.4 1,243,796 + +0.8 1,243,797 - -0.6 1,243,798 + +0.2 1,243,799 - +1.2 1,243,799 - +1.2 1,243,808 + -0.0 1,243,809 - -0.6 1,243,809 - +0.5 1,243,809 - +0.2 1,243,809 - -0.0 1,243,867 + -0.1 1,243,868 - -0.2 1,243,868 - -0.2 1,243,928 + +0.3 1,244,050 - -0.6 1,244,564 + SM_b21010 0.59 +0.5 1,244,564 + SM_b21010 0.59 +0.7 1,244,564 + SM_b21010 0.59 +0.2 1,244,565 - SM_b21010 0.59 -0.2 1,244,584 + SM_b21010 0.61 -0.4 1,244,584 + SM_b21010 0.61 +0.5 1,244,584 + SM_b21010 0.61 +0.1 1,244,584 + +1.7 1,244,584 + SM_b21010 0.61 +0.2 1,244,585 - SM_b21010 0.61 +0.5 1,244,585 - SM_b21010 0.61 -0.1 1,244,661 - SM_b21010 0.71 -1.0 1,244,692 - SM_b21010 0.75 -0.3 1,245,358 + SM_b21011 0.29 +0.6 1,245,559 + SM_b21011 0.42 -0.7 1,245,560 - SM_b21011 0.42 +0.5 1,245,761 + SM_b21011 0.56 -1.4 1,245,761 + SM_b21011 0.56 -0.4 1,245,761 + SM_b21011 0.56 -0.6 1,245,762 - SM_b21011 0.56 -0.3 1,245,762 - SM_b21011 0.56 -0.9 1,245,762 - SM_b21011 0.56 -0.7 1,245,792 + SM_b21011 0.58 +0.6 1,245,792 + SM_b21011 0.58 -0.8 1,245,792 + SM_b21011 0.58 -1.1 1,245,793 - SM_b21011 0.58 -1.0 1,245,866 + SM_b21011 0.63 +1.2
Or see this region's nucleotide sequence