Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20937 and SM_b20938 are separated by 46 nucleotides SM_b20938 and SM_b20939 overlap by 4 nucleotides SM_b20939 and SM_b20940 overlap by 4 nucleotides SM_b20940 and SM_b20941 are separated by 144 nucleotides
SM_b20937: SM_b20937 - ABC transporter ATP-binding protein/permease, at 1,161,991 to 1,163,811
_b20937
SM_b20938: SM_b20938 - hypothetical protein, at 1,163,858 to 1,164,595
_b20938
SM_b20939: SM_b20939 - 6-pyruvoyl-tetrahydropterin synthase, at 1,164,592 to 1,164,951
_b20939
SM_b20940: SM_b20940 - hypothetical protein, at 1,164,948 to 1,165,658
_b20940
SM_b20941: SM_b20941 - MsbA-like saccharide exporting ABC transporter ATP-binding/permease subunits, at 1,165,803 to 1,167,617
_b20941
Position (kb)
1164
1165 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1163.838 kb on + strand at 1164.019 kb on + strand, within SM_b20938 at 1164.020 kb on - strand, within SM_b20938 at 1164.040 kb on - strand, within SM_b20938 at 1164.040 kb on - strand, within SM_b20938 at 1164.081 kb on + strand, within SM_b20938 at 1164.081 kb on + strand, within SM_b20938 at 1164.081 kb on + strand, within SM_b20938 at 1164.081 kb on + strand, within SM_b20938 at 1164.082 kb on - strand, within SM_b20938 at 1164.087 kb on + strand, within SM_b20938 at 1164.088 kb on - strand, within SM_b20938 at 1164.120 kb on - strand, within SM_b20938 at 1164.120 kb on - strand, within SM_b20938 at 1164.323 kb on + strand, within SM_b20938 at 1164.323 kb on + strand, within SM_b20938 at 1164.324 kb on - strand at 1164.324 kb on - strand, within SM_b20938 at 1164.432 kb on + strand, within SM_b20938 at 1164.603 kb on - strand at 1164.677 kb on + strand, within SM_b20939 at 1164.763 kb on - strand, within SM_b20939 at 1164.764 kb on + strand, within SM_b20939 at 1164.764 kb on + strand, within SM_b20939 at 1164.764 kb on + strand, within SM_b20939 at 1164.765 kb on - strand at 1164.791 kb on + strand, within SM_b20939 at 1164.851 kb on + strand, within SM_b20939 at 1164.851 kb on + strand, within SM_b20939 at 1164.851 kb on + strand, within SM_b20939 at 1164.851 kb on + strand, within SM_b20939 at 1164.851 kb on + strand, within SM_b20939 at 1164.851 kb on + strand, within SM_b20939 at 1164.852 kb on - strand, within SM_b20939 at 1164.852 kb on - strand, within SM_b20939 at 1165.100 kb on + strand, within SM_b20940 at 1165.100 kb on + strand, within SM_b20940 at 1165.100 kb on + strand, within SM_b20940 at 1165.100 kb on + strand, within SM_b20940 at 1165.101 kb on - strand, within SM_b20940 at 1165.101 kb on - strand, within SM_b20940 at 1165.102 kb on + strand, within SM_b20940 at 1165.102 kb on + strand, within SM_b20940 at 1165.102 kb on + strand, within SM_b20940 at 1165.102 kb on + strand, within SM_b20940 at 1165.103 kb on - strand, within SM_b20940 at 1165.190 kb on - strand, within SM_b20940 at 1165.207 kb on + strand, within SM_b20940 at 1165.273 kb on + strand, within SM_b20940 at 1165.274 kb on - strand, within SM_b20940 at 1165.408 kb on + strand, within SM_b20940 at 1165.409 kb on - strand, within SM_b20940 at 1165.409 kb on - strand, within SM_b20940 at 1165.541 kb on + strand, within SM_b20940 at 1165.542 kb on - strand, within SM_b20940 at 1165.559 kb on - strand, within SM_b20940 at 1165.559 kb on - strand, within SM_b20940 at 1165.644 kb on + strand at 1165.645 kb on - strand at 1165.703 kb on + strand at 1165.704 kb on - strand at 1165.704 kb on - strand at 1165.704 kb on - strand at 1165.718 kb on - strand at 1165.867 kb on + strand at 1165.867 kb on + strand at 1165.868 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 1,163,838 + -0.3 1,164,019 + SM_b20938 0.22 +0.4 1,164,020 - SM_b20938 0.22 +0.4 1,164,040 - SM_b20938 0.25 +0.0 1,164,040 - SM_b20938 0.25 -0.7 1,164,081 + SM_b20938 0.30 -0.1 1,164,081 + SM_b20938 0.30 +0.2 1,164,081 + SM_b20938 0.30 -1.0 1,164,081 + SM_b20938 0.30 +1.6 1,164,082 - SM_b20938 0.30 -0.5 1,164,087 + SM_b20938 0.31 +1.1 1,164,088 - SM_b20938 0.31 -0.1 1,164,120 - SM_b20938 0.36 -1.6 1,164,120 - SM_b20938 0.36 +0.5 1,164,323 + SM_b20938 0.63 +0.2 1,164,323 + SM_b20938 0.63 -0.1 1,164,324 - +0.2 1,164,324 - SM_b20938 0.63 +0.0 1,164,432 + SM_b20938 0.78 +0.2 1,164,603 - +2.6 1,164,677 + SM_b20939 0.24 +0.0 1,164,763 - SM_b20939 0.47 +0.7 1,164,764 + SM_b20939 0.48 -0.3 1,164,764 + SM_b20939 0.48 +0.4 1,164,764 + SM_b20939 0.48 -0.0 1,164,765 - +0.8 1,164,791 + SM_b20939 0.55 +1.4 1,164,851 + SM_b20939 0.72 -0.2 1,164,851 + SM_b20939 0.72 +0.5 1,164,851 + SM_b20939 0.72 +2.4 1,164,851 + SM_b20939 0.72 -0.4 1,164,851 + SM_b20939 0.72 +0.2 1,164,851 + SM_b20939 0.72 -1.6 1,164,852 - SM_b20939 0.72 +0.6 1,164,852 - SM_b20939 0.72 +1.8 1,165,100 + SM_b20940 0.21 +0.3 1,165,100 + SM_b20940 0.21 -0.6 1,165,100 + SM_b20940 0.21 -0.5 1,165,100 + SM_b20940 0.21 +1.4 1,165,101 - SM_b20940 0.22 -0.5 1,165,101 - SM_b20940 0.22 -0.3 1,165,102 + SM_b20940 0.22 -1.1 1,165,102 + SM_b20940 0.22 +0.2 1,165,102 + SM_b20940 0.22 -2.9 1,165,102 + SM_b20940 0.22 +1.4 1,165,103 - SM_b20940 0.22 -1.0 1,165,190 - SM_b20940 0.34 +1.4 1,165,207 + SM_b20940 0.36 -0.3 1,165,273 + SM_b20940 0.46 +0.9 1,165,274 - SM_b20940 0.46 -0.1 1,165,408 + SM_b20940 0.65 +1.1 1,165,409 - SM_b20940 0.65 +0.7 1,165,409 - SM_b20940 0.65 -0.1 1,165,541 + SM_b20940 0.83 -0.3 1,165,542 - SM_b20940 0.84 +0.6 1,165,559 - SM_b20940 0.86 -0.7 1,165,559 - SM_b20940 0.86 -0.5 1,165,644 + +0.1 1,165,645 - -0.6 1,165,703 + -0.7 1,165,704 - -0.0 1,165,704 - -1.7 1,165,704 - -0.9 1,165,718 - -0.6 1,165,867 + +0.3 1,165,867 + +0.2 1,165,868 - -0.6
Or see this region's nucleotide sequence