Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20877 and SM_b20878 are separated by 39 nucleotides SM_b20878 and SM_b20879 are separated by 20 nucleotides SM_b20879 and SM_b20880 are separated by 598 nucleotides
SM_b20877: SM_b20877 - oxidoreductase, at 1,283,304 to 1,284,434
_b20877
SM_b20878: SM_b20878 - hypothetical protein, at 1,284,474 to 1,285,190
_b20878
SM_b20879: SM_b20879 - hypothetical protein, at 1,285,211 to 1,285,663
_b20879
SM_b20880: SM_b20880 - ATP-dependent RNA helicase, at 1,286,262 to 1,287,773
_b20880
Position (kb)
1285
1286 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1284.284 kb on + strand, within SM_b20877 at 1284.284 kb on + strand, within SM_b20877 at 1284.284 kb on + strand, within SM_b20877 at 1284.285 kb on - strand, within SM_b20877 at 1284.285 kb on - strand, within SM_b20877 at 1284.462 kb on - strand at 1284.543 kb on - strand at 1284.543 kb on - strand at 1284.883 kb on + strand, within SM_b20878 at 1284.908 kb on - strand, within SM_b20878 at 1284.978 kb on + strand, within SM_b20878 at 1285.395 kb on + strand, within SM_b20879 at 1285.396 kb on - strand, within SM_b20879 at 1285.396 kb on - strand, within SM_b20879 at 1285.396 kb on - strand, within SM_b20879 at 1285.462 kb on + strand, within SM_b20879 at 1285.462 kb on + strand, within SM_b20879 at 1285.462 kb on + strand, within SM_b20879 at 1285.462 kb on + strand, within SM_b20879 at 1285.463 kb on - strand, within SM_b20879 at 1285.464 kb on + strand, within SM_b20879 at 1285.465 kb on - strand, within SM_b20879 at 1285.465 kb on - strand, within SM_b20879 at 1285.465 kb on - strand, within SM_b20879 at 1285.465 kb on - strand, within SM_b20879 at 1285.465 kb on - strand, within SM_b20879 at 1285.664 kb on + strand at 1285.664 kb on + strand at 1285.665 kb on - strand at 1285.690 kb on + strand at 1285.690 kb on + strand at 1285.690 kb on + strand at 1285.690 kb on + strand at 1285.690 kb on + strand at 1285.691 kb on - strand at 1285.750 kb on + strand at 1285.868 kb on + strand at 1285.868 kb on + strand at 1285.868 kb on + strand at 1285.869 kb on - strand at 1285.869 kb on - strand at 1285.964 kb on + strand at 1285.965 kb on - strand at 1286.030 kb on - strand at 1286.030 kb on - strand at 1286.153 kb on + strand at 1286.255 kb on - strand at 1286.257 kb on - strand at 1286.557 kb on + strand, within SM_b20880
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 1,284,284 + SM_b20877 0.87 -1.0 1,284,284 + SM_b20877 0.87 -0.2 1,284,284 + SM_b20877 0.87 -0.5 1,284,285 - SM_b20877 0.87 -0.1 1,284,285 - SM_b20877 0.87 +0.1 1,284,462 - -0.7 1,284,543 - -1.0 1,284,543 - -0.7 1,284,883 + SM_b20878 0.57 -0.0 1,284,908 - SM_b20878 0.61 +0.0 1,284,978 + SM_b20878 0.70 +0.2 1,285,395 + SM_b20879 0.41 +0.4 1,285,396 - SM_b20879 0.41 -1.6 1,285,396 - SM_b20879 0.41 +0.1 1,285,396 - SM_b20879 0.41 +0.6 1,285,462 + SM_b20879 0.55 -0.5 1,285,462 + SM_b20879 0.55 +0.1 1,285,462 + SM_b20879 0.55 -0.1 1,285,462 + SM_b20879 0.55 -0.1 1,285,463 - SM_b20879 0.56 -0.9 1,285,464 + SM_b20879 0.56 -0.9 1,285,465 - SM_b20879 0.56 -1.6 1,285,465 - SM_b20879 0.56 -0.5 1,285,465 - SM_b20879 0.56 +0.2 1,285,465 - SM_b20879 0.56 -0.6 1,285,465 - SM_b20879 0.56 -0.7 1,285,664 + +0.1 1,285,664 + +0.7 1,285,665 - -2.2 1,285,690 + +0.2 1,285,690 + -1.4 1,285,690 + -0.5 1,285,690 + -0.1 1,285,690 + +0.1 1,285,691 - -0.8 1,285,750 + +0.3 1,285,868 + +0.1 1,285,868 + +0.1 1,285,868 + +0.5 1,285,869 - +0.9 1,285,869 - -0.6 1,285,964 + -0.1 1,285,965 - +1.1 1,286,030 - +0.1 1,286,030 - -0.7 1,286,153 + +0.7 1,286,255 - +0.4 1,286,257 - +2.4 1,286,557 + SM_b20880 0.20 +1.0
Or see this region's nucleotide sequence