Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20841 and SM_b20842 are separated by 347 nucleotides SM_b20842 and SM_b20843 are separated by 3 nucleotides
SM_b20841: SM_b20841 - hypothetical protein, at 631,879 to 633,090
_b20841
SM_b20842: SM_b20842 - TonB-dependent receptor protein, at 633,438 to 634,667
_b20842
SM_b20843: SM_b20843 - hypothetical protein, at 634,671 to 636,197
_b20843
Position (kb) 633
634
635 Strain fitness (log2 ratio) -2
-1
0
1
2 at 632.990 kb on + strand at 632.991 kb on - strand at 633.090 kb on + strand at 633.090 kb on + strand at 633.096 kb on + strand at 633.096 kb on + strand at 633.096 kb on + strand at 633.096 kb on + strand at 633.097 kb on - strand at 633.097 kb on - strand at 633.127 kb on + strand at 633.128 kb on - strand at 633.128 kb on - strand at 633.128 kb on - strand at 633.162 kb on - strand at 633.300 kb on - strand at 633.314 kb on - strand at 633.358 kb on + strand at 633.482 kb on - strand at 633.514 kb on + strand at 633.514 kb on + strand at 633.537 kb on - strand at 633.537 kb on - strand at 633.567 kb on - strand, within SM_b20842 at 633.730 kb on - strand, within SM_b20842 at 633.730 kb on - strand, within SM_b20842 at 633.745 kb on - strand, within SM_b20842 at 633.910 kb on + strand, within SM_b20842 at 633.911 kb on - strand, within SM_b20842 at 633.911 kb on - strand, within SM_b20842 at 634.046 kb on + strand, within SM_b20842 at 634.046 kb on + strand, within SM_b20842 at 634.047 kb on - strand, within SM_b20842 at 634.047 kb on - strand, within SM_b20842 at 634.102 kb on + strand, within SM_b20842 at 634.102 kb on + strand, within SM_b20842 at 634.103 kb on - strand, within SM_b20842 at 634.151 kb on - strand, within SM_b20842 at 634.151 kb on - strand, within SM_b20842 at 634.151 kb on - strand, within SM_b20842 at 634.258 kb on + strand, within SM_b20842 at 634.258 kb on + strand, within SM_b20842 at 634.258 kb on + strand, within SM_b20842 at 634.258 kb on + strand, within SM_b20842 at 634.263 kb on + strand, within SM_b20842 at 634.291 kb on - strand, within SM_b20842 at 634.307 kb on - strand, within SM_b20842 at 634.307 kb on - strand, within SM_b20842 at 634.307 kb on - strand, within SM_b20842 at 634.307 kb on - strand, within SM_b20842 at 634.307 kb on - strand, within SM_b20842 at 634.439 kb on - strand, within SM_b20842 at 634.439 kb on - strand, within SM_b20842 at 634.448 kb on - strand, within SM_b20842 at 634.448 kb on - strand, within SM_b20842 at 634.571 kb on + strand at 634.627 kb on - strand at 634.627 kb on - strand at 634.627 kb on - strand at 634.673 kb on - strand at 634.712 kb on - strand at 634.799 kb on - strand at 634.813 kb on + strand at 634.814 kb on - strand at 634.814 kb on - strand at 634.867 kb on - strand, within SM_b20843 at 634.871 kb on - strand, within SM_b20843 at 634.871 kb on - strand, within SM_b20843 at 634.871 kb on - strand, within SM_b20843 at 634.871 kb on - strand, within SM_b20843 at 635.273 kb on - strand, within SM_b20843 at 635.479 kb on + strand, within SM_b20843 at 635.568 kb on - strand, within SM_b20843
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 632,990 + +0.4 632,991 - -0.4 633,090 + -0.4 633,090 + +1.6 633,096 + -0.7 633,096 + -0.2 633,096 + +0.1 633,096 + +0.4 633,097 - -0.1 633,097 - +0.0 633,127 + -1.3 633,128 - +0.9 633,128 - +0.0 633,128 - -0.3 633,162 - -2.4 633,300 - -0.2 633,314 - +1.9 633,358 + -0.3 633,482 - -2.3 633,514 + +0.8 633,514 + -0.6 633,537 - -0.2 633,537 - +0.6 633,567 - SM_b20842 0.10 +1.4 633,730 - SM_b20842 0.24 -0.2 633,730 - SM_b20842 0.24 -0.3 633,745 - SM_b20842 0.25 -1.0 633,910 + SM_b20842 0.38 -1.0 633,911 - SM_b20842 0.38 +0.7 633,911 - SM_b20842 0.38 +0.7 634,046 + SM_b20842 0.49 +0.3 634,046 + SM_b20842 0.49 -2.6 634,047 - SM_b20842 0.50 -0.3 634,047 - SM_b20842 0.50 +0.2 634,102 + SM_b20842 0.54 -0.4 634,102 + SM_b20842 0.54 -0.8 634,103 - SM_b20842 0.54 -0.1 634,151 - SM_b20842 0.58 +0.4 634,151 - SM_b20842 0.58 +0.1 634,151 - SM_b20842 0.58 +1.4 634,258 + SM_b20842 0.67 -0.3 634,258 + SM_b20842 0.67 -1.9 634,258 + SM_b20842 0.67 +1.6 634,258 + SM_b20842 0.67 +0.2 634,263 + SM_b20842 0.67 +0.0 634,291 - SM_b20842 0.69 +1.5 634,307 - SM_b20842 0.71 +2.2 634,307 - SM_b20842 0.71 -0.3 634,307 - SM_b20842 0.71 +0.3 634,307 - SM_b20842 0.71 -0.0 634,307 - SM_b20842 0.71 +1.0 634,439 - SM_b20842 0.81 +0.2 634,439 - SM_b20842 0.81 -0.8 634,448 - SM_b20842 0.82 +0.4 634,448 - SM_b20842 0.82 -1.3 634,571 + +1.3 634,627 - +0.6 634,627 - -0.9 634,627 - -0.1 634,673 - -0.5 634,712 - -0.3 634,799 - +0.3 634,813 + +0.4 634,814 - +0.3 634,814 - +0.9 634,867 - SM_b20843 0.13 +0.1 634,871 - SM_b20843 0.13 -0.2 634,871 - SM_b20843 0.13 +0.8 634,871 - SM_b20843 0.13 -0.6 634,871 - SM_b20843 0.13 -1.6 635,273 - SM_b20843 0.39 -1.5 635,479 + SM_b20843 0.53 -0.2 635,568 - SM_b20843 0.59 -1.4
Or see this region's nucleotide sequence