Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20818 and SM_b20819 are separated by 42 nucleotides SM_b20819 and SM_b20820 are separated by 109 nucleotides
SM_b20818: SM_b20818 - hydrocarbon oxygenase, at 607,130 to 608,221
_b20818
SM_b20819: SM_b20819 - ferredoxin, at 608,264 to 608,581
_b20819
SM_b20820: SM_b20820 - ferredoxin reductase, at 608,691 to 609,920
_b20820
Position (kb) 608
609 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 607.340 kb on + strand, within SM_b20818 at 607.340 kb on + strand, within SM_b20818 at 607.382 kb on + strand, within SM_b20818 at 607.382 kb on + strand, within SM_b20818 at 607.383 kb on - strand, within SM_b20818 at 607.383 kb on - strand, within SM_b20818 at 607.383 kb on - strand, within SM_b20818 at 607.383 kb on - strand, within SM_b20818 at 607.544 kb on - strand, within SM_b20818 at 607.766 kb on + strand, within SM_b20818 at 607.766 kb on + strand, within SM_b20818 at 607.767 kb on - strand, within SM_b20818 at 607.794 kb on - strand, within SM_b20818 at 607.794 kb on - strand, within SM_b20818 at 607.934 kb on + strand, within SM_b20818 at 607.935 kb on - strand, within SM_b20818 at 607.935 kb on - strand, within SM_b20818 at 607.935 kb on - strand, within SM_b20818 at 607.976 kb on + strand, within SM_b20818 at 607.976 kb on + strand, within SM_b20818 at 607.976 kb on + strand, within SM_b20818 at 607.977 kb on - strand, within SM_b20818 at 607.977 kb on - strand, within SM_b20818 at 608.174 kb on + strand at 608.219 kb on + strand at 608.220 kb on - strand at 608.357 kb on + strand, within SM_b20819 at 608.358 kb on - strand, within SM_b20819 at 608.434 kb on - strand, within SM_b20819 at 608.434 kb on - strand, within SM_b20819 at 608.467 kb on + strand, within SM_b20819 at 608.484 kb on - strand, within SM_b20819 at 608.484 kb on - strand, within SM_b20819 at 608.534 kb on + strand, within SM_b20819 at 608.579 kb on + strand at 608.700 kb on - strand at 608.808 kb on + strand at 608.809 kb on - strand at 608.809 kb on - strand at 608.809 kb on - strand at 608.884 kb on - strand, within SM_b20820 at 608.900 kb on + strand, within SM_b20820 at 608.901 kb on - strand, within SM_b20820 at 608.901 kb on - strand, within SM_b20820 at 608.982 kb on + strand, within SM_b20820 at 608.983 kb on - strand, within SM_b20820 at 608.993 kb on - strand, within SM_b20820 at 608.993 kb on - strand, within SM_b20820 at 609.104 kb on + strand, within SM_b20820 at 609.104 kb on + strand, within SM_b20820 at 609.105 kb on - strand, within SM_b20820 at 609.105 kb on - strand, within SM_b20820 at 609.105 kb on - strand, within SM_b20820 at 609.497 kb on - strand, within SM_b20820 at 609.537 kb on + strand, within SM_b20820 at 609.538 kb on - strand, within SM_b20820
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 607,340 + SM_b20818 0.19 -0.1 607,340 + SM_b20818 0.19 -0.0 607,382 + SM_b20818 0.23 +0.9 607,382 + SM_b20818 0.23 +0.7 607,383 - SM_b20818 0.23 +0.2 607,383 - SM_b20818 0.23 -0.2 607,383 - SM_b20818 0.23 -0.7 607,383 - SM_b20818 0.23 -0.3 607,544 - SM_b20818 0.38 +0.3 607,766 + SM_b20818 0.58 +0.7 607,766 + SM_b20818 0.58 -1.4 607,767 - SM_b20818 0.58 -0.8 607,794 - SM_b20818 0.61 -0.6 607,794 - SM_b20818 0.61 -0.8 607,934 + SM_b20818 0.74 +0.7 607,935 - SM_b20818 0.74 -0.2 607,935 - SM_b20818 0.74 +1.0 607,935 - SM_b20818 0.74 -1.8 607,976 + SM_b20818 0.77 -0.2 607,976 + SM_b20818 0.77 -1.8 607,976 + SM_b20818 0.77 +0.3 607,977 - SM_b20818 0.78 +1.5 607,977 - SM_b20818 0.78 +0.6 608,174 + -0.3 608,219 + +0.6 608,220 - -1.0 608,357 + SM_b20819 0.29 +4.1 608,358 - SM_b20819 0.30 -0.4 608,434 - SM_b20819 0.53 -0.0 608,434 - SM_b20819 0.53 -1.4 608,467 + SM_b20819 0.64 +2.2 608,484 - SM_b20819 0.69 -1.2 608,484 - SM_b20819 0.69 +0.6 608,534 + SM_b20819 0.85 -0.2 608,579 + +0.3 608,700 - -0.1 608,808 + +1.0 608,809 - +0.5 608,809 - +0.8 608,809 - +0.5 608,884 - SM_b20820 0.16 -0.4 608,900 + SM_b20820 0.17 +1.0 608,901 - SM_b20820 0.17 -1.4 608,901 - SM_b20820 0.17 -0.2 608,982 + SM_b20820 0.24 +0.2 608,983 - SM_b20820 0.24 +0.2 608,993 - SM_b20820 0.25 +1.4 608,993 - SM_b20820 0.25 +0.3 609,104 + SM_b20820 0.34 +0.6 609,104 + SM_b20820 0.34 -0.4 609,105 - SM_b20820 0.34 -1.0 609,105 - SM_b20820 0.34 -0.1 609,105 - SM_b20820 0.34 +0.3 609,497 - SM_b20820 0.66 -0.2 609,537 + SM_b20820 0.69 -0.6 609,538 - SM_b20820 0.69 +0.6
Or see this region's nucleotide sequence