Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20814 and SM_b20815 are separated by 50 nucleotides SM_b20815 and SM_b20816 are separated by 65 nucleotides
SM_b20814: SM_b20814 - hypothetical protein, at 601,995 to 602,735
_b20814
SM_b20815: SM_b20815 - outer membrane protein assembly protein, at 602,786 to 604,453
_b20815
SM_b20816: SM_b20816 - hypothetical protein, at 604,519 to 605,808
_b20816
Position (kb) 602
603
604
605 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 601.839 kb on + strand at 601.840 kb on - strand at 601.898 kb on + strand at 601.898 kb on + strand at 601.898 kb on + strand at 601.899 kb on - strand at 601.899 kb on - strand at 602.000 kb on + strand at 602.000 kb on + strand at 602.001 kb on - strand at 602.001 kb on - strand at 602.002 kb on + strand at 602.002 kb on + strand at 602.002 kb on + strand at 602.016 kb on - strand at 602.165 kb on + strand, within SM_b20814 at 602.166 kb on - strand, within SM_b20814 at 602.166 kb on - strand, within SM_b20814 at 602.166 kb on - strand, within SM_b20814 at 602.166 kb on - strand, within SM_b20814 at 602.166 kb on - strand, within SM_b20814 at 602.189 kb on + strand, within SM_b20814 at 602.332 kb on - strand, within SM_b20814 at 602.471 kb on + strand, within SM_b20814 at 602.471 kb on + strand, within SM_b20814 at 602.496 kb on + strand, within SM_b20814 at 602.560 kb on + strand, within SM_b20814 at 602.560 kb on + strand, within SM_b20814 at 602.561 kb on - strand, within SM_b20814 at 602.569 kb on + strand, within SM_b20814 at 602.569 kb on + strand, within SM_b20814 at 602.570 kb on - strand, within SM_b20814 at 602.652 kb on + strand, within SM_b20814 at 602.656 kb on - strand, within SM_b20814 at 602.656 kb on - strand, within SM_b20814 at 602.718 kb on + strand at 602.718 kb on + strand at 602.718 kb on + strand at 602.734 kb on - strand at 602.739 kb on + strand at 602.916 kb on - strand at 603.008 kb on + strand, within SM_b20815 at 603.172 kb on - strand, within SM_b20815 at 603.525 kb on - strand, within SM_b20815 at 603.744 kb on + strand, within SM_b20815 at 603.744 kb on + strand, within SM_b20815 at 604.058 kb on - strand, within SM_b20815 at 604.068 kb on - strand, within SM_b20815 at 604.068 kb on - strand, within SM_b20815 at 604.215 kb on + strand, within SM_b20815 at 604.216 kb on - strand, within SM_b20815 at 604.482 kb on + strand at 604.520 kb on + strand at 604.520 kb on + strand at 604.521 kb on - strand at 604.521 kb on - strand at 605.053 kb on + strand, within SM_b20816 at 605.053 kb on + strand, within SM_b20816 at 605.061 kb on - strand, within SM_b20816 at 605.200 kb on - strand, within SM_b20816 at 605.333 kb on - strand, within SM_b20816 at 605.333 kb on - strand, within SM_b20816
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 601,839 + -0.1 601,840 - -0.3 601,898 + +0.4 601,898 + +1.2 601,898 + +0.5 601,899 - -1.4 601,899 - +1.0 602,000 + -0.6 602,000 + +1.7 602,001 - -0.5 602,001 - -0.6 602,002 + +0.2 602,002 + -0.2 602,002 + +1.4 602,016 - -1.4 602,165 + SM_b20814 0.23 +0.5 602,166 - SM_b20814 0.23 -0.5 602,166 - SM_b20814 0.23 -1.3 602,166 - SM_b20814 0.23 +1.3 602,166 - SM_b20814 0.23 -0.0 602,166 - SM_b20814 0.23 +0.7 602,189 + SM_b20814 0.26 -1.2 602,332 - SM_b20814 0.45 +0.7 602,471 + SM_b20814 0.64 -2.2 602,471 + SM_b20814 0.64 -0.4 602,496 + SM_b20814 0.68 -0.5 602,560 + SM_b20814 0.76 -0.9 602,560 + SM_b20814 0.76 +1.9 602,561 - SM_b20814 0.76 -0.1 602,569 + SM_b20814 0.77 +0.4 602,569 + SM_b20814 0.77 +0.2 602,570 - SM_b20814 0.78 +0.0 602,652 + SM_b20814 0.89 +0.0 602,656 - SM_b20814 0.89 +0.9 602,656 - SM_b20814 0.89 -0.6 602,718 + +1.1 602,718 + -0.4 602,718 + -0.0 602,734 - +0.4 602,739 + -1.3 602,916 - +0.5 603,008 + SM_b20815 0.13 -0.0 603,172 - SM_b20815 0.23 +7.5 603,525 - SM_b20815 0.44 -0.0 603,744 + SM_b20815 0.57 -0.3 603,744 + SM_b20815 0.57 +0.1 604,058 - SM_b20815 0.76 -0.2 604,068 - SM_b20815 0.77 -0.8 604,068 - SM_b20815 0.77 +0.8 604,215 + SM_b20815 0.86 +0.2 604,216 - SM_b20815 0.86 -0.9 604,482 + -0.8 604,520 + +0.1 604,520 + -0.4 604,521 - -2.0 604,521 - -0.1 605,053 + SM_b20816 0.41 +0.2 605,053 + SM_b20816 0.41 -0.0 605,061 - SM_b20816 0.42 -0.9 605,200 - SM_b20816 0.53 -1.0 605,333 - SM_b20816 0.63 +0.6 605,333 - SM_b20816 0.63 -0.6
Or see this region's nucleotide sequence