Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20812 and SM_b20813 are separated by 630 nucleotides SM_b20813 and SM_b20814 are separated by 337 nucleotides
SM_b20812: SM_b20812 - hypothetical protein, at 598,175 to 599,221
_b20812
SM_b20813: SM_b20813 - lipid ABC transporter permease/ATP-binding protein, at 599,852 to 601,657
_b20813
SM_b20814: SM_b20814 - hypothetical protein, at 601,995 to 602,735
_b20814
Position (kb) 599
600
601
602 Strain fitness (log2 ratio) -2
-1
0
1
2 at 598.856 kb on + strand, within SM_b20812 at 598.857 kb on - strand, within SM_b20812 at 598.857 kb on - strand, within SM_b20812 at 598.915 kb on + strand, within SM_b20812 at 598.915 kb on + strand, within SM_b20812 at 598.915 kb on + strand, within SM_b20812 at 598.964 kb on + strand, within SM_b20812 at 598.964 kb on + strand, within SM_b20812 at 598.964 kb on + strand, within SM_b20812 at 598.964 kb on + strand, within SM_b20812 at 598.964 kb on + strand, within SM_b20812 at 598.964 kb on + strand, within SM_b20812 at 598.964 kb on + strand, within SM_b20812 at 598.965 kb on - strand, within SM_b20812 at 598.965 kb on - strand, within SM_b20812 at 598.965 kb on - strand, within SM_b20812 at 598.965 kb on - strand, within SM_b20812 at 598.966 kb on + strand, within SM_b20812 at 598.966 kb on + strand, within SM_b20812 at 598.966 kb on + strand, within SM_b20812 at 598.967 kb on - strand, within SM_b20812 at 598.990 kb on - strand, within SM_b20812 at 599.120 kb on + strand at 599.120 kb on + strand at 599.268 kb on + strand at 599.269 kb on - strand at 599.303 kb on + strand at 599.303 kb on + strand at 599.303 kb on + strand at 599.303 kb on + strand at 599.303 kb on + strand at 599.304 kb on - strand at 599.304 kb on - strand at 599.304 kb on - strand at 599.305 kb on + strand at 599.305 kb on + strand at 599.305 kb on + strand at 599.306 kb on - strand at 599.306 kb on - strand at 599.306 kb on - strand at 599.306 kb on - strand at 599.306 kb on - strand at 599.404 kb on + strand at 599.405 kb on - strand at 599.405 kb on - strand at 599.477 kb on + strand at 599.489 kb on + strand at 599.545 kb on + strand at 599.545 kb on + strand at 599.546 kb on - strand at 599.546 kb on - strand at 599.719 kb on - strand at 599.719 kb on - strand at 599.719 kb on - strand at 599.788 kb on + strand at 599.788 kb on + strand at 599.790 kb on + strand at 599.790 kb on + strand at 599.791 kb on - strand at 599.791 kb on - strand at 599.791 kb on - strand at 599.791 kb on - strand at 599.791 kb on - strand at 599.850 kb on - strand at 599.850 kb on - strand at 599.887 kb on + strand at 599.910 kb on + strand at 600.087 kb on + strand, within SM_b20813 at 600.122 kb on + strand, within SM_b20813 at 600.122 kb on + strand, within SM_b20813 at 600.123 kb on - strand, within SM_b20813 at 600.123 kb on - strand, within SM_b20813 at 600.160 kb on + strand, within SM_b20813 at 600.160 kb on + strand, within SM_b20813 at 600.173 kb on + strand, within SM_b20813 at 600.174 kb on - strand, within SM_b20813 at 600.174 kb on - strand, within SM_b20813 at 600.175 kb on + strand, within SM_b20813 at 600.175 kb on + strand, within SM_b20813 at 600.175 kb on + strand, within SM_b20813 at 600.175 kb on + strand, within SM_b20813 at 600.175 kb on + strand, within SM_b20813 at 600.189 kb on - strand, within SM_b20813 at 600.357 kb on + strand, within SM_b20813 at 600.358 kb on - strand, within SM_b20813 at 600.358 kb on - strand, within SM_b20813 at 600.358 kb on - strand, within SM_b20813 at 600.425 kb on + strand, within SM_b20813 at 600.486 kb on + strand, within SM_b20813 at 600.680 kb on + strand, within SM_b20813 at 600.681 kb on - strand, within SM_b20813 at 600.681 kb on - strand, within SM_b20813 at 600.681 kb on - strand, within SM_b20813 at 600.701 kb on + strand, within SM_b20813 at 600.702 kb on - strand, within SM_b20813 at 600.702 kb on - strand, within SM_b20813 at 600.702 kb on - strand, within SM_b20813 at 600.702 kb on - strand, within SM_b20813 at 600.738 kb on + strand, within SM_b20813 at 600.758 kb on + strand, within SM_b20813 at 600.758 kb on + strand, within SM_b20813 at 600.758 kb on + strand, within SM_b20813 at 600.778 kb on - strand, within SM_b20813 at 600.933 kb on - strand, within SM_b20813 at 601.055 kb on + strand, within SM_b20813 at 601.098 kb on + strand, within SM_b20813 at 601.098 kb on + strand, within SM_b20813 at 601.099 kb on - strand, within SM_b20813 at 601.108 kb on + strand, within SM_b20813 at 601.109 kb on - strand, within SM_b20813 at 601.139 kb on + strand, within SM_b20813 at 601.139 kb on + strand, within SM_b20813 at 601.157 kb on + strand, within SM_b20813 at 601.157 kb on + strand, within SM_b20813 at 601.158 kb on - strand, within SM_b20813 at 601.158 kb on - strand, within SM_b20813 at 601.193 kb on + strand, within SM_b20813 at 601.264 kb on - strand, within SM_b20813 at 601.288 kb on + strand, within SM_b20813 at 601.288 kb on + strand at 601.289 kb on - strand, within SM_b20813 at 601.289 kb on - strand, within SM_b20813 at 601.375 kb on + strand, within SM_b20813 at 601.396 kb on + strand, within SM_b20813 at 601.504 kb on + strand at 601.592 kb on + strand at 601.593 kb on - strand at 601.639 kb on - strand at 601.639 kb on - strand at 601.655 kb on + strand at 601.655 kb on + strand at 601.655 kb on + strand at 601.656 kb on - strand at 601.656 kb on - strand at 601.656 kb on - strand at 601.656 kb on - strand at 601.656 kb on - strand at 601.656 kb on - strand at 601.756 kb on + strand at 601.763 kb on + strand at 601.839 kb on + strand at 601.840 kb on - strand at 601.898 kb on + strand at 601.898 kb on + strand at 601.898 kb on + strand at 601.899 kb on - strand at 601.899 kb on - strand at 602.000 kb on + strand at 602.000 kb on + strand at 602.001 kb on - strand at 602.001 kb on - strand at 602.002 kb on + strand at 602.002 kb on + strand at 602.002 kb on + strand at 602.016 kb on - strand at 602.165 kb on + strand, within SM_b20814 at 602.166 kb on - strand, within SM_b20814 at 602.166 kb on - strand, within SM_b20814 at 602.166 kb on - strand, within SM_b20814 at 602.166 kb on - strand, within SM_b20814 at 602.166 kb on - strand, within SM_b20814 at 602.189 kb on + strand, within SM_b20814 at 602.332 kb on - strand, within SM_b20814 at 602.471 kb on + strand, within SM_b20814 at 602.471 kb on + strand, within SM_b20814 at 602.496 kb on + strand, within SM_b20814 at 602.560 kb on + strand, within SM_b20814 at 602.560 kb on + strand, within SM_b20814 at 602.561 kb on - strand, within SM_b20814 at 602.569 kb on + strand, within SM_b20814 at 602.569 kb on + strand, within SM_b20814 at 602.570 kb on - strand, within SM_b20814 at 602.652 kb on + strand, within SM_b20814 at 602.656 kb on - strand, within SM_b20814 at 602.656 kb on - strand, within SM_b20814
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 598,856 + SM_b20812 0.65 -0.0 598,857 - SM_b20812 0.65 +0.4 598,857 - SM_b20812 0.65 +0.2 598,915 + SM_b20812 0.71 -0.5 598,915 + SM_b20812 0.71 +0.9 598,915 + SM_b20812 0.71 +0.3 598,964 + SM_b20812 0.75 +0.2 598,964 + SM_b20812 0.75 +0.4 598,964 + SM_b20812 0.75 +1.0 598,964 + SM_b20812 0.75 +0.6 598,964 + SM_b20812 0.75 -0.6 598,964 + SM_b20812 0.75 +0.3 598,964 + SM_b20812 0.75 -1.0 598,965 - SM_b20812 0.75 -0.8 598,965 - SM_b20812 0.75 -0.1 598,965 - SM_b20812 0.75 -0.6 598,965 - SM_b20812 0.75 -2.4 598,966 + SM_b20812 0.76 -1.7 598,966 + SM_b20812 0.76 -0.2 598,966 + SM_b20812 0.76 +0.6 598,967 - SM_b20812 0.76 +0.8 598,990 - SM_b20812 0.78 +1.1 599,120 + -1.6 599,120 + +0.8 599,268 + +0.0 599,269 - +0.4 599,303 + +0.1 599,303 + -0.1 599,303 + -0.1 599,303 + +0.2 599,303 + +0.1 599,304 - -0.2 599,304 - +0.5 599,304 - -0.0 599,305 + -1.6 599,305 + +0.8 599,305 + +2.1 599,306 - +1.8 599,306 - +0.4 599,306 - +1.2 599,306 - -0.0 599,306 - -0.2 599,404 + -0.2 599,405 - +0.9 599,405 - +1.3 599,477 + +0.7 599,489 + -0.2 599,545 + +0.4 599,545 + +0.6 599,546 - -1.3 599,546 - +2.2 599,719 - -1.2 599,719 - -0.5 599,719 - -0.2 599,788 + -0.0 599,788 + -0.3 599,790 + +0.2 599,790 + +0.4 599,791 - -1.8 599,791 - -0.4 599,791 - -0.4 599,791 - -1.1 599,791 - -2.0 599,850 - -0.2 599,850 - -0.1 599,887 + +1.7 599,910 + -0.2 600,087 + SM_b20813 0.13 +0.1 600,122 + SM_b20813 0.15 +0.2 600,122 + SM_b20813 0.15 +0.0 600,123 - SM_b20813 0.15 -1.1 600,123 - SM_b20813 0.15 -1.0 600,160 + SM_b20813 0.17 -0.2 600,160 + SM_b20813 0.17 -0.4 600,173 + SM_b20813 0.18 -0.4 600,174 - SM_b20813 0.18 -0.8 600,174 - SM_b20813 0.18 -0.3 600,175 + SM_b20813 0.18 -1.1 600,175 + SM_b20813 0.18 +1.0 600,175 + SM_b20813 0.18 -0.2 600,175 + SM_b20813 0.18 -0.6 600,175 + SM_b20813 0.18 -0.4 600,189 - SM_b20813 0.19 -0.4 600,357 + SM_b20813 0.28 +0.3 600,358 - SM_b20813 0.28 -2.3 600,358 - SM_b20813 0.28 +0.4 600,358 - SM_b20813 0.28 +1.4 600,425 + SM_b20813 0.32 -0.3 600,486 + SM_b20813 0.35 -0.3 600,680 + SM_b20813 0.46 +0.1 600,681 - SM_b20813 0.46 -0.6 600,681 - SM_b20813 0.46 -0.1 600,681 - SM_b20813 0.46 -2.0 600,701 + SM_b20813 0.47 -1.0 600,702 - SM_b20813 0.47 -2.2 600,702 - SM_b20813 0.47 -0.4 600,702 - SM_b20813 0.47 -0.6 600,702 - SM_b20813 0.47 +1.6 600,738 + SM_b20813 0.49 +0.4 600,758 + SM_b20813 0.50 -1.2 600,758 + SM_b20813 0.50 +0.1 600,758 + SM_b20813 0.50 +0.2 600,778 - SM_b20813 0.51 -0.1 600,933 - SM_b20813 0.60 -0.3 601,055 + SM_b20813 0.67 -1.1 601,098 + SM_b20813 0.69 -0.0 601,098 + SM_b20813 0.69 -0.7 601,099 - SM_b20813 0.69 -0.2 601,108 + SM_b20813 0.70 -0.4 601,109 - SM_b20813 0.70 +0.5 601,139 + SM_b20813 0.71 +1.0 601,139 + SM_b20813 0.71 -0.2 601,157 + SM_b20813 0.72 -0.2 601,157 + SM_b20813 0.72 +0.1 601,158 - SM_b20813 0.72 -0.6 601,158 - SM_b20813 0.72 -0.3 601,193 + SM_b20813 0.74 -0.8 601,264 - SM_b20813 0.78 -0.1 601,288 + SM_b20813 0.80 -1.5 601,288 + -0.1 601,289 - SM_b20813 0.80 -0.7 601,289 - SM_b20813 0.80 +0.4 601,375 + SM_b20813 0.84 -0.6 601,396 + SM_b20813 0.85 -1.7 601,504 + -0.7 601,592 + -0.3 601,593 - +0.1 601,639 - -1.9 601,639 - +0.2 601,655 + -0.4 601,655 + -0.1 601,655 + -1.3 601,656 - -1.4 601,656 - -0.6 601,656 - -0.7 601,656 - +0.9 601,656 - -1.6 601,656 - -0.1 601,756 + -0.1 601,763 + -1.5 601,839 + -0.1 601,840 - -0.3 601,898 + +0.4 601,898 + +1.2 601,898 + +0.5 601,899 - -1.4 601,899 - +1.0 602,000 + -0.6 602,000 + +1.7 602,001 - -0.5 602,001 - -0.6 602,002 + +0.2 602,002 + -0.2 602,002 + +1.4 602,016 - -1.4 602,165 + SM_b20814 0.23 +0.5 602,166 - SM_b20814 0.23 -0.5 602,166 - SM_b20814 0.23 -1.3 602,166 - SM_b20814 0.23 +1.3 602,166 - SM_b20814 0.23 -0.0 602,166 - SM_b20814 0.23 +0.7 602,189 + SM_b20814 0.26 -1.2 602,332 - SM_b20814 0.45 +0.7 602,471 + SM_b20814 0.64 -2.2 602,471 + SM_b20814 0.64 -0.4 602,496 + SM_b20814 0.68 -0.5 602,560 + SM_b20814 0.76 -0.9 602,560 + SM_b20814 0.76 +1.9 602,561 - SM_b20814 0.76 -0.1 602,569 + SM_b20814 0.77 +0.4 602,569 + SM_b20814 0.77 +0.2 602,570 - SM_b20814 0.78 +0.0 602,652 + SM_b20814 0.89 +0.0 602,656 - SM_b20814 0.89 +0.9 602,656 - SM_b20814 0.89 -0.6
Or see this region's nucleotide sequence