Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20718 and SM_b20719 are separated by 77 nucleotides SM_b20719 and SM_b20720 are separated by 65 nucleotides
SM_b20718: SM_b20718 - sugar uptake ABC transporter ATP-binding protein, at 1,521,833 to 1,523,359
_b20718
SM_b20719: SM_b20719 - sugar uptake ABC transporter permease, at 1,523,437 to 1,524,447
_b20719
SM_b20720: SM_b20720 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,524,513 to 1,525,463
_b20720
Position (kb)
1523
1524
1525 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1522.491 kb on + strand, within SM_b20718 at 1522.659 kb on - strand, within SM_b20718 at 1522.850 kb on + strand, within SM_b20718 at 1522.901 kb on + strand, within SM_b20718 at 1522.949 kb on + strand, within SM_b20718 at 1523.159 kb on + strand, within SM_b20718 at 1523.160 kb on - strand, within SM_b20718 at 1523.160 kb on - strand, within SM_b20718 at 1523.160 kb on - strand, within SM_b20718 at 1523.879 kb on - strand, within SM_b20719 at 1523.879 kb on - strand, within SM_b20719 at 1523.939 kb on + strand, within SM_b20719 at 1523.962 kb on + strand, within SM_b20719 at 1523.963 kb on - strand, within SM_b20719 at 1524.101 kb on - strand, within SM_b20719 at 1524.181 kb on + strand, within SM_b20719 at 1524.181 kb on + strand, within SM_b20719 at 1524.460 kb on + strand at 1524.461 kb on - strand at 1524.490 kb on + strand at 1524.491 kb on - strand at 1524.496 kb on + strand at 1524.526 kb on + strand at 1524.906 kb on + strand, within SM_b20720 at 1524.906 kb on + strand, within SM_b20720 at 1524.907 kb on - strand, within SM_b20720 at 1524.907 kb on - strand, within SM_b20720 at 1524.951 kb on + strand, within SM_b20720 at 1525.084 kb on - strand, within SM_b20720 at 1525.084 kb on - strand, within SM_b20720 at 1525.112 kb on + strand, within SM_b20720 at 1525.119 kb on - strand, within SM_b20720 at 1525.128 kb on + strand, within SM_b20720 at 1525.129 kb on - strand, within SM_b20720 at 1525.141 kb on - strand, within SM_b20720 at 1525.233 kb on + strand, within SM_b20720 at 1525.233 kb on + strand, within SM_b20720 at 1525.234 kb on - strand, within SM_b20720 at 1525.234 kb on - strand, within SM_b20720 at 1525.234 kb on - strand, within SM_b20720 at 1525.234 kb on - strand, within SM_b20720 at 1525.314 kb on + strand, within SM_b20720 at 1525.314 kb on + strand, within SM_b20720 at 1525.365 kb on + strand, within SM_b20720 at 1525.365 kb on + strand, within SM_b20720 at 1525.392 kb on + strand at 1525.393 kb on - strand at 1525.393 kb on - strand at 1525.440 kb on + strand at 1525.440 kb on + strand at 1525.441 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 1,522,491 + SM_b20718 0.43 -0.4 1,522,659 - SM_b20718 0.54 -1.0 1,522,850 + SM_b20718 0.67 +1.6 1,522,901 + SM_b20718 0.70 -0.0 1,522,949 + SM_b20718 0.73 -0.5 1,523,159 + SM_b20718 0.87 +0.9 1,523,160 - SM_b20718 0.87 +0.3 1,523,160 - SM_b20718 0.87 -0.5 1,523,160 - SM_b20718 0.87 +1.0 1,523,879 - SM_b20719 0.44 +0.3 1,523,879 - SM_b20719 0.44 -0.9 1,523,939 + SM_b20719 0.50 -1.8 1,523,962 + SM_b20719 0.52 +0.1 1,523,963 - SM_b20719 0.52 +0.1 1,524,101 - SM_b20719 0.66 -0.7 1,524,181 + SM_b20719 0.74 -1.4 1,524,181 + SM_b20719 0.74 -0.9 1,524,460 + -0.1 1,524,461 - -0.1 1,524,490 + +0.2 1,524,491 - -0.3 1,524,496 + -0.2 1,524,526 + +0.7 1,524,906 + SM_b20720 0.41 -0.1 1,524,906 + SM_b20720 0.41 -1.8 1,524,907 - SM_b20720 0.41 +1.0 1,524,907 - SM_b20720 0.41 +1.0 1,524,951 + SM_b20720 0.46 -0.3 1,525,084 - SM_b20720 0.60 +0.3 1,525,084 - SM_b20720 0.60 +0.8 1,525,112 + SM_b20720 0.63 -3.0 1,525,119 - SM_b20720 0.64 +0.2 1,525,128 + SM_b20720 0.65 +0.1 1,525,129 - SM_b20720 0.65 +2.2 1,525,141 - SM_b20720 0.66 +0.5 1,525,233 + SM_b20720 0.76 -0.3 1,525,233 + SM_b20720 0.76 +0.6 1,525,234 - SM_b20720 0.76 +2.0 1,525,234 - SM_b20720 0.76 -0.0 1,525,234 - SM_b20720 0.76 -0.5 1,525,234 - SM_b20720 0.76 +0.4 1,525,314 + SM_b20720 0.84 +1.8 1,525,314 + SM_b20720 0.84 -1.0 1,525,365 + SM_b20720 0.90 -0.9 1,525,365 + SM_b20720 0.90 +1.2 1,525,392 + +0.1 1,525,393 - +0.4 1,525,393 - -0.4 1,525,440 + -0.7 1,525,440 + -2.0 1,525,441 - +0.1
Or see this region's nucleotide sequence