Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20716 and SM_b20717 are separated by 88 nucleotides SM_b20717 and SM_b20718 are separated by 266 nucleotides
SM_b20716: SM_b20716 - hypothetical protein, at 1,519,556 to 1,520,452
_b20716
SM_b20717: SM_b20717 - LacI family transcriptional regulator, at 1,520,541 to 1,521,566
_b20717
SM_b20718: SM_b20718 - sugar uptake ABC transporter ATP-binding protein, at 1,521,833 to 1,523,359
_b20718
Position (kb)
1520
1521
1522 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1519.667 kb on + strand, within SM_b20716 at 1519.719 kb on + strand, within SM_b20716 at 1519.719 kb on + strand, within SM_b20716 at 1519.896 kb on + strand, within SM_b20716 at 1519.897 kb on - strand, within SM_b20716 at 1519.932 kb on + strand, within SM_b20716 at 1520.042 kb on + strand, within SM_b20716 at 1520.212 kb on + strand, within SM_b20716 at 1520.279 kb on + strand, within SM_b20716 at 1520.279 kb on + strand, within SM_b20716 at 1520.330 kb on + strand, within SM_b20716 at 1520.330 kb on + strand, within SM_b20716 at 1520.331 kb on - strand, within SM_b20716 at 1520.331 kb on - strand, within SM_b20716 at 1520.331 kb on - strand, within SM_b20716 at 1520.348 kb on - strand, within SM_b20716 at 1520.403 kb on + strand at 1520.469 kb on + strand at 1520.490 kb on + strand at 1520.495 kb on + strand at 1520.495 kb on + strand at 1520.495 kb on + strand at 1520.542 kb on + strand at 1520.766 kb on + strand, within SM_b20717 at 1520.767 kb on - strand, within SM_b20717 at 1520.773 kb on + strand, within SM_b20717 at 1520.774 kb on - strand, within SM_b20717 at 1520.922 kb on - strand, within SM_b20717 at 1520.922 kb on - strand, within SM_b20717 at 1520.922 kb on - strand, within SM_b20717 at 1520.922 kb on - strand, within SM_b20717 at 1520.922 kb on - strand, within SM_b20717 at 1520.922 kb on - strand, within SM_b20717 at 1520.981 kb on + strand, within SM_b20717 at 1520.981 kb on + strand, within SM_b20717 at 1520.983 kb on + strand, within SM_b20717 at 1521.091 kb on + strand, within SM_b20717 at 1521.091 kb on + strand, within SM_b20717 at 1521.091 kb on + strand, within SM_b20717 at 1521.091 kb on + strand, within SM_b20717 at 1521.091 kb on + strand, within SM_b20717 at 1521.092 kb on - strand, within SM_b20717 at 1521.092 kb on - strand, within SM_b20717 at 1521.092 kb on - strand, within SM_b20717 at 1521.092 kb on - strand, within SM_b20717 at 1521.092 kb on - strand, within SM_b20717 at 1521.326 kb on + strand, within SM_b20717 at 1521.326 kb on + strand, within SM_b20717 at 1521.327 kb on - strand, within SM_b20717 at 1521.418 kb on + strand, within SM_b20717 at 1521.527 kb on + strand at 1521.528 kb on - strand at 1521.590 kb on - strand at 1521.686 kb on + strand at 1521.701 kb on + strand at 1521.701 kb on + strand at 1521.701 kb on + strand at 1522.202 kb on + strand, within SM_b20718 at 1522.202 kb on + strand, within SM_b20718 at 1522.202 kb on + strand, within SM_b20718 at 1522.202 kb on + strand, within SM_b20718 at 1522.202 kb on + strand, within SM_b20718 at 1522.203 kb on - strand, within SM_b20718 at 1522.203 kb on - strand, within SM_b20718 at 1522.203 kb on - strand, within SM_b20718 at 1522.203 kb on - strand, within SM_b20718 at 1522.204 kb on + strand, within SM_b20718 at 1522.204 kb on + strand, within SM_b20718 at 1522.204 kb on + strand, within SM_b20718 at 1522.205 kb on - strand, within SM_b20718 at 1522.491 kb on + strand, within SM_b20718
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 1,519,667 + SM_b20716 0.12 -0.0 1,519,719 + SM_b20716 0.18 -0.0 1,519,719 + SM_b20716 0.18 -0.1 1,519,896 + SM_b20716 0.38 +0.1 1,519,897 - SM_b20716 0.38 +0.2 1,519,932 + SM_b20716 0.42 +0.2 1,520,042 + SM_b20716 0.54 -0.1 1,520,212 + SM_b20716 0.73 +1.4 1,520,279 + SM_b20716 0.81 +0.2 1,520,279 + SM_b20716 0.81 +0.2 1,520,330 + SM_b20716 0.86 -1.5 1,520,330 + SM_b20716 0.86 -0.6 1,520,331 - SM_b20716 0.86 +0.3 1,520,331 - SM_b20716 0.86 +0.3 1,520,331 - SM_b20716 0.86 -0.1 1,520,348 - SM_b20716 0.88 +1.3 1,520,403 + -0.6 1,520,469 + +0.8 1,520,490 + -0.0 1,520,495 + -0.3 1,520,495 + -0.5 1,520,495 + +2.0 1,520,542 + -0.8 1,520,766 + SM_b20717 0.22 +1.0 1,520,767 - SM_b20717 0.22 +0.1 1,520,773 + SM_b20717 0.23 -0.4 1,520,774 - SM_b20717 0.23 +0.6 1,520,922 - SM_b20717 0.37 -1.0 1,520,922 - SM_b20717 0.37 +1.0 1,520,922 - SM_b20717 0.37 -0.3 1,520,922 - SM_b20717 0.37 -0.4 1,520,922 - SM_b20717 0.37 -1.1 1,520,922 - SM_b20717 0.37 +0.1 1,520,981 + SM_b20717 0.43 -0.5 1,520,981 + SM_b20717 0.43 -0.1 1,520,983 + SM_b20717 0.43 -0.7 1,521,091 + SM_b20717 0.54 -0.4 1,521,091 + SM_b20717 0.54 -0.2 1,521,091 + SM_b20717 0.54 +0.2 1,521,091 + SM_b20717 0.54 +1.0 1,521,091 + SM_b20717 0.54 +1.5 1,521,092 - SM_b20717 0.54 +0.2 1,521,092 - SM_b20717 0.54 -0.7 1,521,092 - SM_b20717 0.54 +0.9 1,521,092 - SM_b20717 0.54 +0.0 1,521,092 - SM_b20717 0.54 +2.2 1,521,326 + SM_b20717 0.77 +0.5 1,521,326 + SM_b20717 0.77 -1.7 1,521,327 - SM_b20717 0.77 +1.3 1,521,418 + SM_b20717 0.85 +1.1 1,521,527 + +0.5 1,521,528 - -0.1 1,521,590 - +0.1 1,521,686 + -0.1 1,521,701 + -1.9 1,521,701 + -0.7 1,521,701 + +0.0 1,522,202 + SM_b20718 0.24 -0.2 1,522,202 + SM_b20718 0.24 -0.1 1,522,202 + SM_b20718 0.24 -0.0 1,522,202 + SM_b20718 0.24 +0.2 1,522,202 + SM_b20718 0.24 -0.8 1,522,203 - SM_b20718 0.24 +0.4 1,522,203 - SM_b20718 0.24 +2.3 1,522,203 - SM_b20718 0.24 +0.2 1,522,203 - SM_b20718 0.24 +0.8 1,522,204 + SM_b20718 0.24 -0.2 1,522,204 + SM_b20718 0.24 +0.0 1,522,204 + SM_b20718 0.24 +0.0 1,522,205 - SM_b20718 0.24 -0.1 1,522,491 + SM_b20718 0.43 -0.4
Or see this region's nucleotide sequence