Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20713

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20712 and SM_b20713 are separated by 186 nucleotidesSM_b20713 and SM_b20714 are separated by 96 nucleotides SM_b20712: SM_b20712 - rhizopine uptake ABC transporter substrate-binding protein precursor, at 1,514,330 to 1,515,259 _b20712 SM_b20713: SM_b20713 - sugar uptake ABC transporter ATP-binding protein, at 1,515,446 to 1,516,987 _b20713 SM_b20714: SM_b20714 - sugar uptake ABC transporter permease, at 1,517,084 to 1,518,109 _b20714 Position (kb) 1515 1516 1517Strain fitness (log2 ratio) -2 -1 0 1 2at 1514.463 kb on - strand, within SM_b20712at 1514.463 kb on - strand, within SM_b20712at 1514.463 kb on - strand, within SM_b20712at 1514.648 kb on + strand, within SM_b20712at 1514.648 kb on + strand, within SM_b20712at 1514.649 kb on - strand, within SM_b20712at 1514.649 kb on - strand, within SM_b20712at 1514.677 kb on + strand, within SM_b20712at 1514.678 kb on - strand, within SM_b20712at 1514.753 kb on - strand, within SM_b20712at 1514.753 kb on - strand, within SM_b20712at 1515.200 kb on + strandat 1515.200 kb on + strandat 1515.200 kb on + strandat 1515.201 kb on - strandat 1515.201 kb on - strandat 1515.201 kb on - strandat 1515.201 kb on - strandat 1515.201 kb on - strandat 1515.201 kb on - strandat 1515.229 kb on + strandat 1515.510 kb on - strandat 1515.662 kb on + strand, within SM_b20713at 1515.662 kb on + strand, within SM_b20713at 1515.663 kb on - strand, within SM_b20713at 1515.663 kb on - strand, within SM_b20713at 1515.665 kb on + strand, within SM_b20713at 1516.041 kb on + strand, within SM_b20713at 1516.042 kb on - strand, within SM_b20713at 1516.088 kb on + strand, within SM_b20713at 1516.088 kb on + strand, within SM_b20713at 1516.089 kb on - strand, within SM_b20713at 1516.157 kb on + strand, within SM_b20713at 1516.157 kb on + strand, within SM_b20713at 1516.157 kb on + strand, within SM_b20713at 1516.157 kb on + strand, within SM_b20713at 1516.157 kb on + strand, within SM_b20713at 1516.158 kb on - strand, within SM_b20713at 1516.158 kb on - strand, within SM_b20713at 1516.159 kb on + strand, within SM_b20713at 1516.330 kb on - strand, within SM_b20713at 1516.717 kb on - strand, within SM_b20713at 1516.717 kb on - strand, within SM_b20713at 1517.007 kb on + strandat 1517.007 kb on + strandat 1517.089 kb on + strandat 1517.089 kb on + strandat 1517.090 kb on - strandat 1517.417 kb on + strand, within SM_b20714at 1517.449 kb on - strand, within SM_b20714at 1517.583 kb on - strand, within SM_b20714at 1517.699 kb on + strand, within SM_b20714at 1517.699 kb on + strand, within SM_b20714at 1517.795 kb on + strand, within SM_b20714at 1517.795 kb on + strand, within SM_b20714at 1517.795 kb on + strand, within SM_b20714at 1517.796 kb on - strand, within SM_b20714at 1517.882 kb on + strand, within SM_b20714at 1517.882 kb on + strand, within SM_b20714at 1517.883 kb on - strand, within SM_b20714

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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1,514,463 - SM_b20712 0.14 +0.5
1,514,463 - SM_b20712 0.14 -0.3
1,514,463 - SM_b20712 0.14 -0.1
1,514,648 + SM_b20712 0.34 +0.2
1,514,648 + SM_b20712 0.34 -0.4
1,514,649 - SM_b20712 0.34 +0.0
1,514,649 - SM_b20712 0.34 -0.2
1,514,677 + SM_b20712 0.37 +0.3
1,514,678 - SM_b20712 0.37 +0.7
1,514,753 - SM_b20712 0.45 +0.6
1,514,753 - SM_b20712 0.45 -0.9
1,515,200 + +0.0
1,515,200 + -0.3
1,515,200 + +0.2
1,515,201 - -2.0
1,515,201 - -0.7
1,515,201 - +0.8
1,515,201 - -0.2
1,515,201 - +0.4
1,515,201 - -0.2
1,515,229 + +0.3
1,515,510 - +0.4
1,515,662 + SM_b20713 0.14 +0.3
1,515,662 + SM_b20713 0.14 +0.2
1,515,663 - SM_b20713 0.14 +0.0
1,515,663 - SM_b20713 0.14 +0.1
1,515,665 + SM_b20713 0.14 +0.9
1,516,041 + SM_b20713 0.39 +0.4
1,516,042 - SM_b20713 0.39 +0.8
1,516,088 + SM_b20713 0.42 -0.3
1,516,088 + SM_b20713 0.42 +0.7
1,516,089 - SM_b20713 0.42 +0.1
1,516,157 + SM_b20713 0.46 +0.3
1,516,157 + SM_b20713 0.46 +2.3
1,516,157 + SM_b20713 0.46 +2.3
1,516,157 + SM_b20713 0.46 +0.3
1,516,157 + SM_b20713 0.46 -0.7
1,516,158 - SM_b20713 0.46 +1.1
1,516,158 - SM_b20713 0.46 +2.3
1,516,159 + SM_b20713 0.46 +0.1
1,516,330 - SM_b20713 0.57 +0.0
1,516,717 - SM_b20713 0.82 -0.5
1,516,717 - SM_b20713 0.82 +0.5
1,517,007 + +0.3
1,517,007 + +0.4
1,517,089 + +0.2
1,517,089 + -0.4
1,517,090 - +2.7
1,517,417 + SM_b20714 0.32 +1.1
1,517,449 - SM_b20714 0.36 -1.3
1,517,583 - SM_b20714 0.49 +0.7
1,517,699 + SM_b20714 0.60 -0.6
1,517,699 + SM_b20714 0.60 -0.2
1,517,795 + SM_b20714 0.69 +0.9
1,517,795 + SM_b20714 0.69 +1.2
1,517,795 + SM_b20714 0.69 -0.4
1,517,796 - SM_b20714 0.69 +0.1
1,517,882 + SM_b20714 0.78 +0.3
1,517,882 + SM_b20714 0.78 -0.8
1,517,883 - SM_b20714 0.78 -0.1

Or see this region's nucleotide sequence