Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20712 and SM_b20713 are separated by 186 nucleotides SM_b20713 and SM_b20714 are separated by 96 nucleotides
SM_b20712: SM_b20712 - rhizopine uptake ABC transporter substrate-binding protein precursor, at 1,514,330 to 1,515,259
_b20712
SM_b20713: SM_b20713 - sugar uptake ABC transporter ATP-binding protein, at 1,515,446 to 1,516,987
_b20713
SM_b20714: SM_b20714 - sugar uptake ABC transporter permease, at 1,517,084 to 1,518,109
_b20714
Position (kb)
1515
1516
1517 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1514.463 kb on - strand, within SM_b20712 at 1514.463 kb on - strand, within SM_b20712 at 1514.463 kb on - strand, within SM_b20712 at 1514.648 kb on + strand, within SM_b20712 at 1514.648 kb on + strand, within SM_b20712 at 1514.649 kb on - strand, within SM_b20712 at 1514.649 kb on - strand, within SM_b20712 at 1514.677 kb on + strand, within SM_b20712 at 1514.678 kb on - strand, within SM_b20712 at 1514.753 kb on - strand, within SM_b20712 at 1514.753 kb on - strand, within SM_b20712 at 1515.200 kb on + strand at 1515.200 kb on + strand at 1515.200 kb on + strand at 1515.201 kb on - strand at 1515.201 kb on - strand at 1515.201 kb on - strand at 1515.201 kb on - strand at 1515.201 kb on - strand at 1515.201 kb on - strand at 1515.229 kb on + strand at 1515.510 kb on - strand at 1515.662 kb on + strand, within SM_b20713 at 1515.662 kb on + strand, within SM_b20713 at 1515.663 kb on - strand, within SM_b20713 at 1515.663 kb on - strand, within SM_b20713 at 1515.665 kb on + strand, within SM_b20713 at 1516.041 kb on + strand, within SM_b20713 at 1516.042 kb on - strand, within SM_b20713 at 1516.088 kb on + strand, within SM_b20713 at 1516.088 kb on + strand, within SM_b20713 at 1516.089 kb on - strand, within SM_b20713 at 1516.157 kb on + strand, within SM_b20713 at 1516.157 kb on + strand, within SM_b20713 at 1516.157 kb on + strand, within SM_b20713 at 1516.157 kb on + strand, within SM_b20713 at 1516.157 kb on + strand, within SM_b20713 at 1516.158 kb on - strand, within SM_b20713 at 1516.158 kb on - strand, within SM_b20713 at 1516.159 kb on + strand, within SM_b20713 at 1516.330 kb on - strand, within SM_b20713 at 1516.717 kb on - strand, within SM_b20713 at 1516.717 kb on - strand, within SM_b20713 at 1517.007 kb on + strand at 1517.007 kb on + strand at 1517.089 kb on + strand at 1517.089 kb on + strand at 1517.090 kb on - strand at 1517.417 kb on + strand, within SM_b20714 at 1517.449 kb on - strand, within SM_b20714 at 1517.583 kb on - strand, within SM_b20714 at 1517.699 kb on + strand, within SM_b20714 at 1517.699 kb on + strand, within SM_b20714 at 1517.795 kb on + strand, within SM_b20714 at 1517.795 kb on + strand, within SM_b20714 at 1517.795 kb on + strand, within SM_b20714 at 1517.796 kb on - strand, within SM_b20714 at 1517.882 kb on + strand, within SM_b20714 at 1517.882 kb on + strand, within SM_b20714 at 1517.883 kb on - strand, within SM_b20714
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 1,514,463 - SM_b20712 0.14 +0.5 1,514,463 - SM_b20712 0.14 -0.3 1,514,463 - SM_b20712 0.14 -0.1 1,514,648 + SM_b20712 0.34 +0.2 1,514,648 + SM_b20712 0.34 -0.4 1,514,649 - SM_b20712 0.34 +0.0 1,514,649 - SM_b20712 0.34 -0.2 1,514,677 + SM_b20712 0.37 +0.3 1,514,678 - SM_b20712 0.37 +0.7 1,514,753 - SM_b20712 0.45 +0.6 1,514,753 - SM_b20712 0.45 -0.9 1,515,200 + +0.0 1,515,200 + -0.3 1,515,200 + +0.2 1,515,201 - -2.0 1,515,201 - -0.7 1,515,201 - +0.8 1,515,201 - -0.2 1,515,201 - +0.4 1,515,201 - -0.2 1,515,229 + +0.3 1,515,510 - +0.4 1,515,662 + SM_b20713 0.14 +0.3 1,515,662 + SM_b20713 0.14 +0.2 1,515,663 - SM_b20713 0.14 +0.0 1,515,663 - SM_b20713 0.14 +0.1 1,515,665 + SM_b20713 0.14 +0.9 1,516,041 + SM_b20713 0.39 +0.4 1,516,042 - SM_b20713 0.39 +0.8 1,516,088 + SM_b20713 0.42 -0.3 1,516,088 + SM_b20713 0.42 +0.7 1,516,089 - SM_b20713 0.42 +0.1 1,516,157 + SM_b20713 0.46 +0.3 1,516,157 + SM_b20713 0.46 +2.3 1,516,157 + SM_b20713 0.46 +2.3 1,516,157 + SM_b20713 0.46 +0.3 1,516,157 + SM_b20713 0.46 -0.7 1,516,158 - SM_b20713 0.46 +1.1 1,516,158 - SM_b20713 0.46 +2.3 1,516,159 + SM_b20713 0.46 +0.1 1,516,330 - SM_b20713 0.57 +0.0 1,516,717 - SM_b20713 0.82 -0.5 1,516,717 - SM_b20713 0.82 +0.5 1,517,007 + +0.3 1,517,007 + +0.4 1,517,089 + +0.2 1,517,089 + -0.4 1,517,090 - +2.7 1,517,417 + SM_b20714 0.32 +1.1 1,517,449 - SM_b20714 0.36 -1.3 1,517,583 - SM_b20714 0.49 +0.7 1,517,699 + SM_b20714 0.60 -0.6 1,517,699 + SM_b20714 0.60 -0.2 1,517,795 + SM_b20714 0.69 +0.9 1,517,795 + SM_b20714 0.69 +1.2 1,517,795 + SM_b20714 0.69 -0.4 1,517,796 - SM_b20714 0.69 +0.1 1,517,882 + SM_b20714 0.78 +0.3 1,517,882 + SM_b20714 0.78 -0.8 1,517,883 - SM_b20714 0.78 -0.1
Or see this region's nucleotide sequence