Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20595

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20592 and SM_b20593 are separated by 78 nucleotidesSM_b20593 and SM_b20594 are separated by 8 nucleotidesSM_b20594 and SM_b20595 are separated by 52 nucleotidesSM_b20595 and SM_b20596 are separated by 14 nucleotides SM_b20592: SM_b20592 - RNA polymerase sigma factor, at 1,606,089 to 1,606,772 _b20592 SM_b20593: SM_b20593 - hypothetical protein, at 1,606,851 to 1,607,375 _b20593 SM_b20594: SM_b20594 - amicyanin precursor protein, at 1,607,384 to 1,607,701 _b20594 SM_b20595: SM_b20595 - cell division protein FtsK, at 1,607,754 to 1,609,589 _b20595 SM_b20596: SM_b20596 - hypothetical protein, at 1,609,604 to 1,610,593 _b20596 Position (kb) 1607 1608 1609 1610Strain fitness (log2 ratio) -1 0 1at 1606.856 kb on + strandat 1606.960 kb on - strand, within SM_b20593at 1606.960 kb on - strand, within SM_b20593at 1607.183 kb on + strand, within SM_b20593at 1607.184 kb on - strand, within SM_b20593at 1607.184 kb on - strand, within SM_b20593at 1607.208 kb on + strand, within SM_b20593at 1607.208 kb on + strand, within SM_b20593at 1607.413 kb on - strandat 1607.413 kb on - strandat 1607.648 kb on + strand, within SM_b20594at 1607.648 kb on + strand, within SM_b20594at 1607.649 kb on - strand, within SM_b20594at 1607.649 kb on - strand, within SM_b20594at 1607.649 kb on - strand, within SM_b20594at 1607.650 kb on + strand, within SM_b20594at 1607.650 kb on + strand, within SM_b20594at 1607.650 kb on + strand, within SM_b20594at 1607.651 kb on - strand, within SM_b20594at 1607.660 kb on + strand, within SM_b20594at 1607.661 kb on - strand, within SM_b20594at 1607.803 kb on + strandat 1607.803 kb on + strandat 1607.804 kb on - strandat 1607.917 kb on + strandat 1607.917 kb on + strandat 1607.918 kb on - strandat 1607.968 kb on + strand, within SM_b20595at 1608.450 kb on - strand, within SM_b20595at 1608.451 kb on + strand, within SM_b20595at 1608.784 kb on + strand, within SM_b20595at 1608.785 kb on - strand, within SM_b20595at 1609.300 kb on + strand, within SM_b20595at 1609.365 kb on + strand, within SM_b20595at 1609.365 kb on + strand, within SM_b20595at 1610.395 kb on - strand, within SM_b20596

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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1,606,856 + -0.8
1,606,960 - SM_b20593 0.21 -0.0
1,606,960 - SM_b20593 0.21 +0.7
1,607,183 + SM_b20593 0.63 -0.1
1,607,184 - SM_b20593 0.63 -0.4
1,607,184 - SM_b20593 0.63 +0.3
1,607,208 + SM_b20593 0.68 +0.1
1,607,208 + SM_b20593 0.68 -1.2
1,607,413 - +0.8
1,607,413 - -1.4
1,607,648 + SM_b20594 0.83 -0.6
1,607,648 + SM_b20594 0.83 +0.6
1,607,649 - SM_b20594 0.83 -1.0
1,607,649 - SM_b20594 0.83 +0.0
1,607,649 - SM_b20594 0.83 -1.2
1,607,650 + SM_b20594 0.84 +0.2
1,607,650 + SM_b20594 0.84 -0.6
1,607,650 + SM_b20594 0.84 +0.2
1,607,651 - SM_b20594 0.84 -0.5
1,607,660 + SM_b20594 0.87 +1.0
1,607,661 - SM_b20594 0.87 -0.8
1,607,803 + -0.5
1,607,803 + +0.1
1,607,804 - -1.5
1,607,917 + -0.8
1,607,917 + -0.3
1,607,918 - -1.5
1,607,968 + SM_b20595 0.12 +0.3
1,608,450 - SM_b20595 0.38 -0.4
1,608,451 + SM_b20595 0.38 -0.7
1,608,784 + SM_b20595 0.56 -1.4
1,608,785 - SM_b20595 0.56 -0.7
1,609,300 + SM_b20595 0.84 -1.3
1,609,365 + SM_b20595 0.88 -1.0
1,609,365 + SM_b20595 0.88 -1.6
1,610,395 - SM_b20596 0.80 -0.6

Or see this region's nucleotide sequence