Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20557 and SM_b20558 are separated by 720 nucleotides SM_b20558 and SM_b20559 are separated by 132 nucleotides SM_b20559 and SM_b20560 are separated by 126 nucleotides
SM_b20557: SM_b20557 - hypothetical protein, at 582,372 to 582,707
_b20557
SM_b20558: SM_b20558 - hypothetical protein, at 583,428 to 583,838
_b20558
SM_b20559: SM_b20559 - hypothetical protein, at 583,971 to 584,555
_b20559
SM_b20560: SM_b20560 - hypothetical protein, at 584,682 to 584,903
_b20560
Position (kb) 583
584 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 582.484 kb on + strand, within SM_b20557 at 582.485 kb on - strand, within SM_b20557 at 582.488 kb on + strand, within SM_b20557 at 582.519 kb on + strand, within SM_b20557 at 582.520 kb on - strand, within SM_b20557 at 582.537 kb on + strand, within SM_b20557 at 582.537 kb on + strand, within SM_b20557 at 582.537 kb on + strand, within SM_b20557 at 582.538 kb on - strand, within SM_b20557 at 582.538 kb on - strand, within SM_b20557 at 582.564 kb on + strand, within SM_b20557 at 582.565 kb on - strand, within SM_b20557 at 582.565 kb on - strand, within SM_b20557 at 582.740 kb on + strand at 582.740 kb on + strand at 582.827 kb on + strand at 582.827 kb on + strand at 582.851 kb on + strand at 582.851 kb on + strand at 582.851 kb on + strand at 582.852 kb on - strand at 582.852 kb on - strand at 582.887 kb on - strand at 582.918 kb on + strand at 582.923 kb on + strand at 582.955 kb on - strand at 582.964 kb on + strand at 582.979 kb on - strand at 583.075 kb on + strand at 583.136 kb on + strand at 583.190 kb on - strand at 583.190 kb on - strand at 583.429 kb on + strand at 583.429 kb on + strand at 583.456 kb on + strand at 583.456 kb on + strand at 583.540 kb on - strand, within SM_b20558 at 583.602 kb on - strand, within SM_b20558 at 583.602 kb on - strand, within SM_b20558 at 583.602 kb on - strand, within SM_b20558 at 583.663 kb on - strand, within SM_b20558 at 583.663 kb on - strand, within SM_b20558 at 583.663 kb on - strand, within SM_b20558 at 583.663 kb on - strand, within SM_b20558 at 583.912 kb on + strand at 583.913 kb on - strand at 583.913 kb on - strand at 583.913 kb on - strand at 583.913 kb on - strand at 583.967 kb on + strand at 583.967 kb on + strand at 583.968 kb on - strand at 584.017 kb on + strand at 584.054 kb on + strand, within SM_b20559 at 584.055 kb on - strand, within SM_b20559 at 584.222 kb on + strand, within SM_b20559 at 584.463 kb on + strand, within SM_b20559 at 584.473 kb on + strand, within SM_b20559 at 584.473 kb on + strand, within SM_b20559 at 584.474 kb on - strand, within SM_b20559 at 584.504 kb on - strand at 584.526 kb on + strand at 584.527 kb on - strand at 584.544 kb on + strand at 584.545 kb on - strand at 584.620 kb on + strand at 584.621 kb on - strand at 584.680 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 582,484 + SM_b20557 0.33 -1.0 582,485 - SM_b20557 0.34 +0.3 582,488 + SM_b20557 0.35 +0.7 582,519 + SM_b20557 0.44 -0.4 582,520 - SM_b20557 0.44 -0.4 582,537 + SM_b20557 0.49 -0.1 582,537 + SM_b20557 0.49 -0.1 582,537 + SM_b20557 0.49 -0.6 582,538 - SM_b20557 0.49 +1.7 582,538 - SM_b20557 0.49 -0.3 582,564 + SM_b20557 0.57 -0.3 582,565 - SM_b20557 0.57 +0.2 582,565 - SM_b20557 0.57 -0.7 582,740 + -1.4 582,740 + -0.8 582,827 + +1.2 582,827 + -0.2 582,851 + -0.8 582,851 + -0.2 582,851 + +0.6 582,852 - -0.8 582,852 - -1.2 582,887 - +0.6 582,918 + +0.5 582,923 + +1.3 582,955 - -1.3 582,964 + +0.1 582,979 - -0.4 583,075 + -0.6 583,136 + +1.6 583,190 - -1.3 583,190 - -0.1 583,429 + +0.6 583,429 + +1.0 583,456 + +0.3 583,456 + -0.3 583,540 - SM_b20558 0.27 +1.2 583,602 - SM_b20558 0.42 -0.1 583,602 - SM_b20558 0.42 +0.2 583,602 - SM_b20558 0.42 +2.4 583,663 - SM_b20558 0.57 -0.2 583,663 - SM_b20558 0.57 -0.6 583,663 - SM_b20558 0.57 +1.1 583,663 - SM_b20558 0.57 +0.1 583,912 + +0.0 583,913 - -0.4 583,913 - -0.6 583,913 - -0.7 583,913 - +0.3 583,967 + +0.7 583,967 + +1.2 583,968 - -3.5 584,017 + -0.3 584,054 + SM_b20559 0.14 +0.0 584,055 - SM_b20559 0.14 -0.9 584,222 + SM_b20559 0.43 -0.2 584,463 + SM_b20559 0.84 +0.5 584,473 + SM_b20559 0.86 -0.5 584,473 + SM_b20559 0.86 +0.9 584,474 - SM_b20559 0.86 +0.4 584,504 - -0.6 584,526 + +1.3 584,527 - -2.2 584,544 + +0.3 584,545 - +2.4 584,620 + -0.4 584,621 - +0.5 584,680 + -1.2
Or see this region's nucleotide sequence