Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20549 and SM_b20550 are separated by 167 nucleotides SM_b20550 and SM_b20551 are separated by 173 nucleotides SM_b20551 and SM_b20552 are separated by 751 nucleotides
SM_b20549: SM_b20549 - hypothetical protein, at 576,048 to 576,365
_b20549
SM_b20550: SM_b20550 - hypothetical protein, at 576,533 to 576,778
_b20550
SM_b20551: SM_b20551 - hypothetical protein, at 576,952 to 577,398
_b20551
SM_b20552: SM_b20552 - hypothetical protein, at 578,150 to 578,881
_b20552
Position (kb) 576
577
578 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 575.999 kb on + strand at 576.078 kb on + strand at 576.078 kb on + strand at 576.079 kb on - strand at 576.079 kb on - strand at 576.079 kb on - strand at 576.151 kb on - strand, within SM_b20549 at 576.151 kb on - strand, within SM_b20549 at 576.151 kb on - strand, within SM_b20549 at 576.151 kb on - strand, within SM_b20549 at 576.406 kb on + strand at 576.407 kb on - strand at 576.407 kb on - strand at 576.407 kb on - strand at 576.546 kb on + strand at 576.572 kb on + strand, within SM_b20550 at 576.602 kb on - strand, within SM_b20550 at 576.605 kb on + strand, within SM_b20550 at 576.605 kb on + strand, within SM_b20550 at 576.605 kb on + strand, within SM_b20550 at 576.605 kb on + strand, within SM_b20550 at 576.605 kb on + strand, within SM_b20550 at 576.605 kb on + strand, within SM_b20550 at 576.605 kb on + strand, within SM_b20550 at 576.606 kb on - strand, within SM_b20550 at 576.648 kb on + strand, within SM_b20550 at 576.722 kb on + strand at 576.722 kb on + strand, within SM_b20550 at 576.722 kb on + strand, within SM_b20550 at 576.722 kb on + strand, within SM_b20550 at 576.772 kb on + strand at 576.779 kb on + strand at 577.081 kb on - strand, within SM_b20551 at 577.100 kb on + strand, within SM_b20551 at 577.100 kb on + strand at 577.100 kb on + strand, within SM_b20551 at 577.100 kb on + strand, within SM_b20551 at 577.100 kb on + strand, within SM_b20551 at 577.101 kb on - strand, within SM_b20551 at 577.101 kb on - strand, within SM_b20551 at 577.101 kb on - strand, within SM_b20551 at 577.101 kb on - strand, within SM_b20551 at 577.129 kb on + strand, within SM_b20551 at 577.129 kb on + strand, within SM_b20551 at 577.129 kb on + strand, within SM_b20551 at 577.130 kb on - strand, within SM_b20551 at 577.130 kb on - strand, within SM_b20551 at 577.178 kb on + strand, within SM_b20551 at 577.179 kb on - strand, within SM_b20551 at 577.179 kb on - strand, within SM_b20551 at 577.189 kb on - strand, within SM_b20551 at 577.270 kb on + strand, within SM_b20551 at 577.409 kb on + strand at 577.409 kb on + strand at 577.410 kb on - strand at 577.410 kb on - strand at 577.410 kb on - strand at 577.410 kb on - strand at 577.460 kb on - strand at 577.524 kb on - strand at 577.561 kb on + strand at 577.561 kb on + strand at 577.562 kb on - strand at 577.648 kb on - strand at 577.718 kb on + strand at 577.718 kb on + strand at 577.718 kb on + strand at 577.719 kb on - strand at 577.719 kb on - strand at 577.720 kb on + strand at 577.720 kb on + strand at 577.720 kb on + strand at 577.720 kb on + strand at 577.721 kb on - strand at 577.722 kb on + strand at 577.722 kb on + strand at 577.722 kb on + strand at 577.723 kb on - strand at 577.723 kb on - strand at 577.723 kb on - strand at 577.742 kb on + strand at 577.742 kb on + strand at 577.805 kb on + strand at 577.806 kb on - strand at 577.823 kb on - strand at 577.881 kb on + strand at 577.881 kb on + strand at 577.882 kb on - strand at 577.948 kb on - strand at 578.038 kb on + strand at 578.038 kb on + strand at 578.038 kb on + strand at 578.039 kb on - strand at 578.039 kb on - strand at 578.148 kb on + strand at 578.148 kb on + strand at 578.149 kb on - strand at 578.149 kb on - strand at 578.181 kb on + strand at 578.229 kb on + strand, within SM_b20552 at 578.230 kb on - strand, within SM_b20552 at 578.315 kb on + strand, within SM_b20552 at 578.328 kb on + strand, within SM_b20552 at 578.329 kb on - strand, within SM_b20552 at 578.335 kb on - strand, within SM_b20552
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 575,999 + -1.3 576,078 + -0.3 576,078 + -0.9 576,079 - +0.4 576,079 - -0.1 576,079 - -0.1 576,151 - SM_b20549 0.32 +0.3 576,151 - SM_b20549 0.32 -3.1 576,151 - SM_b20549 0.32 +1.4 576,151 - SM_b20549 0.32 +0.7 576,406 + +0.6 576,407 - -1.5 576,407 - +0.2 576,407 - +1.0 576,546 + +0.4 576,572 + SM_b20550 0.16 -0.1 576,602 - SM_b20550 0.28 -0.7 576,605 + SM_b20550 0.29 -0.9 576,605 + SM_b20550 0.29 +0.4 576,605 + SM_b20550 0.29 +0.7 576,605 + SM_b20550 0.29 -0.5 576,605 + SM_b20550 0.29 +0.1 576,605 + SM_b20550 0.29 -0.1 576,605 + SM_b20550 0.29 -0.2 576,606 - SM_b20550 0.30 -1.6 576,648 + SM_b20550 0.47 -2.7 576,722 + +2.8 576,722 + SM_b20550 0.77 +0.1 576,722 + SM_b20550 0.77 -0.4 576,722 + SM_b20550 0.77 -0.5 576,772 + +0.3 576,779 + +0.1 577,081 - SM_b20551 0.29 -0.9 577,100 + SM_b20551 0.33 -0.4 577,100 + +0.6 577,100 + SM_b20551 0.33 -1.0 577,100 + SM_b20551 0.33 -0.1 577,100 + SM_b20551 0.33 -0.1 577,101 - SM_b20551 0.33 -0.1 577,101 - SM_b20551 0.33 +0.5 577,101 - SM_b20551 0.33 -1.1 577,101 - SM_b20551 0.33 -2.5 577,129 + SM_b20551 0.40 -0.2 577,129 + SM_b20551 0.40 -0.1 577,129 + SM_b20551 0.40 +0.1 577,130 - SM_b20551 0.40 -1.7 577,130 - SM_b20551 0.40 -0.0 577,178 + SM_b20551 0.51 -0.4 577,179 - SM_b20551 0.51 -0.1 577,179 - SM_b20551 0.51 -0.6 577,189 - SM_b20551 0.53 +0.0 577,270 + SM_b20551 0.71 +0.2 577,409 + -1.0 577,409 + +2.0 577,410 - -0.4 577,410 - -0.5 577,410 - +0.0 577,410 - +0.1 577,460 - +0.9 577,524 - +0.1 577,561 + +0.2 577,561 + +0.2 577,562 - +0.8 577,648 - +0.2 577,718 + +0.8 577,718 + -0.4 577,718 + -0.3 577,719 - +0.4 577,719 - +0.2 577,720 + -0.1 577,720 + -0.2 577,720 + -0.4 577,720 + -0.6 577,721 - +0.6 577,722 + -0.4 577,722 + +0.9 577,722 + +0.2 577,723 - +0.7 577,723 - +0.0 577,723 - -0.3 577,742 + -0.6 577,742 + +3.6 577,805 + -1.2 577,806 - +0.5 577,823 - +0.2 577,881 + -0.8 577,881 + -0.9 577,882 - -1.5 577,948 - -0.9 578,038 + +1.3 578,038 + +1.1 578,038 + +0.1 578,039 - +0.4 578,039 - -0.9 578,148 + -0.1 578,148 + -0.2 578,149 - +0.0 578,149 - -0.6 578,181 + +0.0 578,229 + SM_b20552 0.11 +0.1 578,230 - SM_b20552 0.11 -0.7 578,315 + SM_b20552 0.23 -0.1 578,328 + SM_b20552 0.24 +0.0 578,329 - SM_b20552 0.24 +0.1 578,335 - SM_b20552 0.25 +1.1
Or see this region's nucleotide sequence