Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20522

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20521 and SM_b20522 are separated by 291 nucleotidesSM_b20522 and SM_b20523 are separated by 473 nucleotides SM_b20521: SM_b20521 - hypothetical protein, at 546,977 to 548,086 _b20521 SM_b20522: SM_b20522 - hypothetical protein, at 548,378 to 548,746 _b20522 SM_b20523: SM_b20523 - hypothetical protein, at 549,220 to 550,428 _b20523 Position (kb) 548 549Strain fitness (log2 ratio) -2 -1 0 1 2at 547.440 kb on + strand, within SM_b20521at 547.441 kb on - strand, within SM_b20521at 547.441 kb on - strand, within SM_b20521at 547.544 kb on + strand, within SM_b20521at 547.545 kb on - strand, within SM_b20521at 547.583 kb on + strand, within SM_b20521at 547.583 kb on + strand, within SM_b20521at 547.769 kb on + strand, within SM_b20521at 547.770 kb on - strand, within SM_b20521at 547.770 kb on - strand, within SM_b20521at 547.804 kb on + strand, within SM_b20521at 547.804 kb on + strand, within SM_b20521at 547.804 kb on + strand, within SM_b20521at 547.868 kb on + strand, within SM_b20521at 547.868 kb on + strand, within SM_b20521at 547.868 kb on + strand, within SM_b20521at 547.868 kb on + strand, within SM_b20521at 547.869 kb on - strand, within SM_b20521at 547.869 kb on - strand, within SM_b20521at 547.869 kb on - strand, within SM_b20521at 547.869 kb on - strand, within SM_b20521at 547.913 kb on + strand, within SM_b20521at 547.915 kb on + strand, within SM_b20521at 547.934 kb on + strand, within SM_b20521at 547.935 kb on - strand, within SM_b20521at 548.102 kb on + strandat 548.106 kb on + strandat 548.107 kb on - strandat 548.107 kb on - strandat 548.165 kb on - strandat 548.353 kb on - strandat 548.363 kb on + strandat 548.414 kb on - strandat 548.433 kb on + strand, within SM_b20522at 548.434 kb on - strand, within SM_b20522at 548.476 kb on + strand, within SM_b20522at 548.519 kb on + strand, within SM_b20522at 548.520 kb on - strand, within SM_b20522at 548.520 kb on - strand, within SM_b20522at 548.520 kb on - strand, within SM_b20522at 548.544 kb on + strand, within SM_b20522at 548.594 kb on + strand, within SM_b20522at 548.595 kb on - strand, within SM_b20522at 548.595 kb on - strand, within SM_b20522at 548.595 kb on - strand, within SM_b20522at 548.678 kb on + strand, within SM_b20522at 548.679 kb on - strand, within SM_b20522at 548.712 kb on - strandat 548.717 kb on + strandat 548.718 kb on - strandat 548.718 kb on - strandat 548.720 kb on + strandat 548.720 kb on + strandat 548.721 kb on - strandat 548.721 kb on - strandat 548.727 kb on + strandat 548.727 kb on + strandat 548.728 kb on - strandat 548.736 kb on - strandat 548.736 kb on - strandat 548.743 kb on - strandat 548.743 kb on - strandat 548.928 kb on + strandat 548.948 kb on + strandat 548.949 kb on - strandat 548.973 kb on - strandat 549.063 kb on + strandat 549.064 kb on - strandat 549.110 kb on - strandat 549.161 kb on - strandat 549.186 kb on + strandat 549.222 kb on - strandat 549.234 kb on - strandat 549.246 kb on + strandat 549.246 kb on + strandat 549.246 kb on + strandat 549.246 kb on + strandat 549.246 kb on + strandat 549.246 kb on + strandat 549.247 kb on - strandat 549.247 kb on - strandat 549.247 kb on - strandat 549.251 kb on + strandat 549.295 kb on + strandat 549.326 kb on + strandat 549.337 kb on - strandat 549.337 kb on - strandat 549.473 kb on - strand, within SM_b20523at 549.476 kb on - strand, within SM_b20523at 549.476 kb on - strand, within SM_b20523at 549.562 kb on + strand, within SM_b20523at 549.562 kb on + strand, within SM_b20523at 549.562 kb on + strand, within SM_b20523at 549.562 kb on + strand, within SM_b20523at 549.562 kb on + strand, within SM_b20523at 549.563 kb on - strand, within SM_b20523at 549.563 kb on - strand, within SM_b20523at 549.563 kb on - strand, within SM_b20523at 549.577 kb on - strand, within SM_b20523

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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547,440 + SM_b20521 0.42 +0.6
547,441 - SM_b20521 0.42 +0.5
547,441 - SM_b20521 0.42 -1.1
547,544 + SM_b20521 0.51 -0.1
547,545 - SM_b20521 0.51 -0.1
547,583 + SM_b20521 0.55 -0.4
547,583 + SM_b20521 0.55 -0.5
547,769 + SM_b20521 0.71 +0.1
547,770 - SM_b20521 0.71 +0.0
547,770 - SM_b20521 0.71 +0.5
547,804 + SM_b20521 0.75 +1.4
547,804 + SM_b20521 0.75 -0.3
547,804 + SM_b20521 0.75 -0.3
547,868 + SM_b20521 0.80 -0.9
547,868 + SM_b20521 0.80 -0.9
547,868 + SM_b20521 0.80 -0.0
547,868 + SM_b20521 0.80 +0.1
547,869 - SM_b20521 0.80 -0.7
547,869 - SM_b20521 0.80 +0.6
547,869 - SM_b20521 0.80 -1.2
547,869 - SM_b20521 0.80 -1.6
547,913 + SM_b20521 0.84 +1.6
547,915 + SM_b20521 0.85 -0.1
547,934 + SM_b20521 0.86 -0.4
547,935 - SM_b20521 0.86 +0.0
548,102 + +0.2
548,106 + -1.9
548,107 - -0.9
548,107 - -0.7
548,165 - -1.5
548,353 - -1.0
548,363 + +1.7
548,414 - +0.4
548,433 + SM_b20522 0.15 -0.2
548,434 - SM_b20522 0.15 +0.4
548,476 + SM_b20522 0.27 -0.3
548,519 + SM_b20522 0.38 -0.3
548,520 - SM_b20522 0.38 -0.7
548,520 - SM_b20522 0.38 +0.6
548,520 - SM_b20522 0.38 +2.0
548,544 + SM_b20522 0.45 +0.5
548,594 + SM_b20522 0.59 -0.2
548,595 - SM_b20522 0.59 +0.2
548,595 - SM_b20522 0.59 +1.3
548,595 - SM_b20522 0.59 +0.8
548,678 + SM_b20522 0.81 +0.3
548,679 - SM_b20522 0.82 +0.3
548,712 - +0.1
548,717 + -1.3
548,718 - +0.4
548,718 - -0.9
548,720 + +0.5
548,720 + -1.0
548,721 - +0.6
548,721 - +0.9
548,727 + +0.2
548,727 + -0.1
548,728 - +0.5
548,736 - +0.1
548,736 - +0.3
548,743 - +0.5
548,743 - -0.6
548,928 + +0.1
548,948 + -1.2
548,949 - -0.5
548,973 - +0.6
549,063 + +0.2
549,064 - +0.6
549,110 - +0.3
549,161 - -0.4
549,186 + -0.8
549,222 - +1.0
549,234 - -0.6
549,246 + +0.4
549,246 + +0.3
549,246 + -2.1
549,246 + +1.2
549,246 + +0.7
549,246 + +0.5
549,247 - +0.1
549,247 - +0.3
549,247 - -1.5
549,251 + -0.6
549,295 + -0.2
549,326 + +1.4
549,337 - +0.6
549,337 - +0.5
549,473 - SM_b20523 0.21 -0.0
549,476 - SM_b20523 0.21 +0.5
549,476 - SM_b20523 0.21 +0.2
549,562 + SM_b20523 0.28 +1.8
549,562 + SM_b20523 0.28 -0.1
549,562 + SM_b20523 0.28 +0.1
549,562 + SM_b20523 0.28 +0.8
549,562 + SM_b20523 0.28 -0.3
549,563 - SM_b20523 0.28 +0.4
549,563 - SM_b20523 0.28 -2.0
549,563 - SM_b20523 0.28 +1.6
549,577 - SM_b20523 0.30 +0.1

Or see this region's nucleotide sequence