Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20507 and SM_b20508 are separated by 64 nucleotides SM_b20508 and SM_b20509 are separated by 188 nucleotides
SM_b20507: SM_b20507 - L-arabinose transporter ATP-binding protein, at 528,861 to 530,387
_b20507
SM_b20508: SM_b20508 - sugar ABC transporter substrate-binding protein, at 530,452 to 531,435
_b20508
SM_b20509: SM_b20509 - transcriptional regulator, at 531,624 to 532,391
_b20509
Position (kb) 530
531
532 Strain fitness (log2 ratio) -2
-1
0
1 at 529.489 kb on + strand, within SM_b20507 at 529.804 kb on + strand, within SM_b20507 at 529.804 kb on + strand, within SM_b20507 at 529.804 kb on + strand, within SM_b20507 at 529.804 kb on + strand, within SM_b20507 at 529.804 kb on + strand, within SM_b20507 at 529.805 kb on - strand, within SM_b20507 at 529.805 kb on - strand, within SM_b20507 at 529.817 kb on + strand, within SM_b20507 at 530.115 kb on + strand, within SM_b20507 at 530.179 kb on + strand, within SM_b20507 at 530.199 kb on + strand, within SM_b20507 at 530.200 kb on - strand, within SM_b20507 at 530.247 kb on + strand at 530.247 kb on + strand at 530.486 kb on + strand at 530.486 kb on + strand at 530.487 kb on - strand at 530.487 kb on - strand at 530.487 kb on - strand at 530.487 kb on - strand at 530.487 kb on - strand at 530.561 kb on + strand, within SM_b20508 at 530.561 kb on + strand, within SM_b20508 at 530.561 kb on + strand, within SM_b20508 at 530.561 kb on + strand, within SM_b20508 at 530.562 kb on - strand, within SM_b20508 at 530.562 kb on - strand, within SM_b20508 at 530.562 kb on - strand, within SM_b20508 at 530.562 kb on - strand, within SM_b20508 at 530.562 kb on - strand, within SM_b20508 at 530.942 kb on + strand, within SM_b20508 at 530.943 kb on - strand, within SM_b20508 at 531.048 kb on + strand, within SM_b20508 at 531.229 kb on + strand, within SM_b20508 at 531.358 kb on + strand at 531.426 kb on + strand at 531.426 kb on + strand at 531.480 kb on + strand at 531.480 kb on + strand at 531.910 kb on + strand, within SM_b20509 at 531.910 kb on + strand, within SM_b20509 at 531.974 kb on + strand, within SM_b20509
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 529,489 + SM_b20507 0.41 +0.4 529,804 + SM_b20507 0.62 -1.7 529,804 + SM_b20507 0.62 -0.0 529,804 + SM_b20507 0.62 +0.1 529,804 + SM_b20507 0.62 -0.9 529,804 + SM_b20507 0.62 -0.0 529,805 - SM_b20507 0.62 +0.3 529,805 - SM_b20507 0.62 -1.5 529,817 + SM_b20507 0.63 -1.2 530,115 + SM_b20507 0.82 -0.2 530,179 + SM_b20507 0.86 -0.3 530,199 + SM_b20507 0.88 -1.3 530,200 - SM_b20507 0.88 +0.4 530,247 + -1.4 530,247 + +0.8 530,486 + -0.0 530,486 + +1.2 530,487 - -2.7 530,487 - -0.4 530,487 - +0.1 530,487 - +0.3 530,487 - -0.4 530,561 + SM_b20508 0.11 -0.4 530,561 + SM_b20508 0.11 +0.9 530,561 + SM_b20508 0.11 +0.5 530,561 + SM_b20508 0.11 +0.5 530,562 - SM_b20508 0.11 -0.4 530,562 - SM_b20508 0.11 -0.0 530,562 - SM_b20508 0.11 +0.5 530,562 - SM_b20508 0.11 +0.2 530,562 - SM_b20508 0.11 -0.0 530,942 + SM_b20508 0.50 +0.1 530,943 - SM_b20508 0.50 +0.3 531,048 + SM_b20508 0.61 -0.6 531,229 + SM_b20508 0.79 +1.5 531,358 + -0.6 531,426 + -0.4 531,426 + +0.6 531,480 + +0.8 531,480 + +0.3 531,910 + SM_b20509 0.37 -1.0 531,910 + SM_b20509 0.37 -0.1 531,974 + SM_b20509 0.46 -0.3
Or see this region's nucleotide sequence