Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20497 and SM_b20498 are separated by 30 nucleotides SM_b20498 and SM_b20499 are separated by 66 nucleotides
SM_b20497: SM_b20497 - L-xylulose kinase, at 516,973 to 518,502
_b20497
SM_b20498: SM_b20498 - hypothetical protein, at 518,533 to 519,375
_b20498
SM_b20499: SM_b20499 - glycerol-3-phosphate dehydrogenase, at 519,442 to 521,175
_b20499
Position (kb) 518
519
520 Strain fitness (log2 ratio) -2
-1
0
1
2 at 517.628 kb on + strand, within SM_b20497 at 518.050 kb on - strand, within SM_b20497 at 518.138 kb on + strand, within SM_b20497 at 518.246 kb on + strand, within SM_b20497 at 518.246 kb on + strand, within SM_b20497 at 518.247 kb on - strand, within SM_b20497 at 518.247 kb on - strand, within SM_b20497 at 518.316 kb on + strand, within SM_b20497 at 518.316 kb on + strand, within SM_b20497 at 518.317 kb on - strand, within SM_b20497 at 518.317 kb on - strand, within SM_b20497 at 518.488 kb on + strand at 518.492 kb on + strand at 518.492 kb on + strand at 518.492 kb on + strand at 518.493 kb on - strand at 518.493 kb on - strand at 518.493 kb on - strand at 518.547 kb on - strand at 518.633 kb on + strand, within SM_b20498 at 518.633 kb on + strand, within SM_b20498 at 518.648 kb on + strand, within SM_b20498 at 518.648 kb on + strand, within SM_b20498 at 518.648 kb on + strand, within SM_b20498 at 518.876 kb on + strand, within SM_b20498 at 518.876 kb on + strand, within SM_b20498 at 518.877 kb on - strand, within SM_b20498 at 518.918 kb on - strand, within SM_b20498 at 518.936 kb on + strand, within SM_b20498 at 518.936 kb on + strand, within SM_b20498 at 518.936 kb on + strand, within SM_b20498 at 518.936 kb on + strand, within SM_b20498 at 519.119 kb on + strand, within SM_b20498 at 519.120 kb on - strand, within SM_b20498 at 519.363 kb on + strand at 519.364 kb on - strand at 519.377 kb on + strand at 519.378 kb on + strand at 519.379 kb on - strand at 519.379 kb on - strand at 519.462 kb on + strand at 519.723 kb on + strand, within SM_b20499 at 519.724 kb on - strand, within SM_b20499 at 519.763 kb on + strand, within SM_b20499 at 519.764 kb on - strand, within SM_b20499 at 520.019 kb on - strand, within SM_b20499 at 520.124 kb on + strand, within SM_b20499 at 520.125 kb on - strand, within SM_b20499 at 520.187 kb on + strand, within SM_b20499 at 520.188 kb on - strand, within SM_b20499 at 520.188 kb on - strand, within SM_b20499 at 520.188 kb on - strand, within SM_b20499 at 520.311 kb on - strand, within SM_b20499 at 520.313 kb on + strand, within SM_b20499
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 517,628 + SM_b20497 0.43 -0.4 518,050 - SM_b20497 0.70 -0.3 518,138 + SM_b20497 0.76 +1.4 518,246 + SM_b20497 0.83 +0.2 518,246 + SM_b20497 0.83 +2.2 518,247 - SM_b20497 0.83 -0.4 518,247 - SM_b20497 0.83 -1.2 518,316 + SM_b20497 0.88 +1.0 518,316 + SM_b20497 0.88 -1.7 518,317 - SM_b20497 0.88 +0.5 518,317 - SM_b20497 0.88 +1.2 518,488 + -1.4 518,492 + -0.1 518,492 + +1.2 518,492 + +0.1 518,493 - +0.3 518,493 - +1.0 518,493 - +0.5 518,547 - +1.8 518,633 + SM_b20498 0.12 +1.5 518,633 + SM_b20498 0.12 +0.6 518,648 + SM_b20498 0.14 +0.9 518,648 + SM_b20498 0.14 +1.3 518,648 + SM_b20498 0.14 +0.8 518,876 + SM_b20498 0.41 +0.8 518,876 + SM_b20498 0.41 -0.3 518,877 - SM_b20498 0.41 +1.0 518,918 - SM_b20498 0.46 -0.2 518,936 + SM_b20498 0.48 +0.8 518,936 + SM_b20498 0.48 +1.2 518,936 + SM_b20498 0.48 -1.9 518,936 + SM_b20498 0.48 +0.0 519,119 + SM_b20498 0.70 -1.5 519,120 - SM_b20498 0.70 +0.2 519,363 + -0.3 519,364 - +1.6 519,377 + +0.6 519,378 + -0.3 519,379 - +0.1 519,379 - -0.4 519,462 + -0.2 519,723 + SM_b20499 0.16 +0.2 519,724 - SM_b20499 0.16 +0.1 519,763 + SM_b20499 0.19 +0.3 519,764 - SM_b20499 0.19 -2.3 520,019 - SM_b20499 0.33 +0.1 520,124 + SM_b20499 0.39 -0.7 520,125 - SM_b20499 0.39 -0.4 520,187 + SM_b20499 0.43 -0.1 520,188 - SM_b20499 0.43 -1.2 520,188 - SM_b20499 0.43 -0.5 520,188 - SM_b20499 0.43 -0.7 520,311 - SM_b20499 0.50 +2.7 520,313 + SM_b20499 0.50 +1.8
Or see this region's nucleotide sequence