Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20463 and SM_b20464 are separated by 188 nucleotides SM_b20464 and SM_b20465 are separated by 165 nucleotides SM_b20465 and SM_b20466 are separated by 174 nucleotides
SM_b20463: SM_b20463 - hypothetical protein, at 475,899 to 476,408
_b20463
SM_b20464: SM_b20464 - hypothetical protein, at 476,597 to 476,899
_b20464
SM_b20465: SM_b20465 - hypothetical protein, at 477,065 to 478,135
_b20465
SM_b20466: SM_b20466 - glucanase, at 478,310 to 479,467
_b20466
Position (kb) 477
478
479 Strain fitness (log2 ratio) -2
-1
0
1
2 at 476.136 kb on + strand, within SM_b20463 at 476.176 kb on + strand, within SM_b20463 at 476.176 kb on + strand, within SM_b20463 at 476.176 kb on + strand, within SM_b20463 at 476.263 kb on - strand, within SM_b20463 at 476.292 kb on + strand, within SM_b20463 at 476.293 kb on - strand, within SM_b20463 at 476.293 kb on - strand, within SM_b20463 at 476.355 kb on + strand, within SM_b20463 at 476.355 kb on + strand, within SM_b20463 at 476.355 kb on + strand, within SM_b20463 at 476.356 kb on - strand, within SM_b20463 at 476.356 kb on - strand, within SM_b20463 at 476.356 kb on - strand, within SM_b20463 at 476.509 kb on + strand at 476.510 kb on - strand at 476.510 kb on - strand at 476.510 kb on - strand at 476.598 kb on + strand at 476.599 kb on - strand at 476.648 kb on - strand, within SM_b20464 at 476.649 kb on + strand, within SM_b20464 at 476.650 kb on - strand, within SM_b20464 at 476.650 kb on - strand, within SM_b20464 at 476.650 kb on - strand, within SM_b20464 at 476.650 kb on - strand, within SM_b20464 at 476.650 kb on - strand, within SM_b20464 at 477.155 kb on + strand at 477.156 kb on - strand at 477.156 kb on - strand at 477.239 kb on - strand, within SM_b20465 at 477.239 kb on - strand, within SM_b20465 at 477.392 kb on + strand, within SM_b20465 at 477.393 kb on - strand, within SM_b20465 at 477.394 kb on + strand, within SM_b20465 at 477.395 kb on - strand, within SM_b20465 at 477.530 kb on + strand, within SM_b20465 at 477.531 kb on - strand, within SM_b20465 at 477.626 kb on - strand, within SM_b20465 at 477.626 kb on - strand, within SM_b20465 at 477.692 kb on + strand, within SM_b20465 at 477.692 kb on + strand, within SM_b20465 at 477.692 kb on + strand, within SM_b20465 at 477.693 kb on - strand, within SM_b20465 at 477.725 kb on + strand, within SM_b20465 at 477.726 kb on - strand, within SM_b20465 at 477.726 kb on - strand, within SM_b20465 at 477.769 kb on + strand, within SM_b20465 at 477.770 kb on - strand, within SM_b20465 at 477.916 kb on - strand, within SM_b20465 at 478.048 kb on + strand at 478.048 kb on + strand at 478.048 kb on + strand at 478.048 kb on + strand at 478.049 kb on - strand at 478.051 kb on - strand at 478.051 kb on - strand at 478.173 kb on + strand at 478.181 kb on + strand at 478.181 kb on + strand at 478.186 kb on + strand at 478.186 kb on + strand at 478.186 kb on + strand at 478.186 kb on + strand at 478.341 kb on - strand at 478.659 kb on - strand, within SM_b20466 at 478.742 kb on - strand, within SM_b20466 at 478.788 kb on + strand, within SM_b20466 at 478.788 kb on + strand, within SM_b20466 at 478.789 kb on - strand, within SM_b20466 at 478.789 kb on - strand, within SM_b20466 at 478.789 kb on - strand, within SM_b20466 at 478.842 kb on + strand, within SM_b20466 at 478.986 kb on + strand, within SM_b20466 at 478.986 kb on + strand, within SM_b20466 at 478.987 kb on - strand, within SM_b20466 at 478.987 kb on - strand, within SM_b20466 at 478.987 kb on - strand, within SM_b20466 at 478.987 kb on - strand, within SM_b20466 at 479.041 kb on - strand, within SM_b20466 at 479.126 kb on + strand, within SM_b20466 at 479.127 kb on - strand, within SM_b20466 at 479.127 kb on - strand, within SM_b20466
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 476,136 + SM_b20463 0.46 -0.0 476,176 + SM_b20463 0.54 +0.6 476,176 + SM_b20463 0.54 -2.5 476,176 + SM_b20463 0.54 -0.3 476,263 - SM_b20463 0.71 +1.1 476,292 + SM_b20463 0.77 -0.9 476,293 - SM_b20463 0.77 -0.3 476,293 - SM_b20463 0.77 -0.5 476,355 + SM_b20463 0.89 -0.5 476,355 + SM_b20463 0.89 -1.2 476,355 + SM_b20463 0.89 -1.1 476,356 - SM_b20463 0.90 +0.0 476,356 - SM_b20463 0.90 +1.1 476,356 - SM_b20463 0.90 -0.1 476,509 + +0.2 476,510 - -1.1 476,510 - -2.0 476,510 - -0.8 476,598 + -0.3 476,599 - +0.5 476,648 - SM_b20464 0.17 -0.1 476,649 + SM_b20464 0.17 -0.4 476,650 - SM_b20464 0.17 +0.5 476,650 - SM_b20464 0.17 -0.5 476,650 - SM_b20464 0.17 +0.6 476,650 - SM_b20464 0.17 -1.0 476,650 - SM_b20464 0.17 -0.7 477,155 + +0.6 477,156 - -0.4 477,156 - -0.4 477,239 - SM_b20465 0.16 -0.5 477,239 - SM_b20465 0.16 +0.2 477,392 + SM_b20465 0.31 -0.3 477,393 - SM_b20465 0.31 +0.1 477,394 + SM_b20465 0.31 -0.3 477,395 - SM_b20465 0.31 +0.1 477,530 + SM_b20465 0.43 +0.3 477,531 - SM_b20465 0.44 +0.5 477,626 - SM_b20465 0.52 -1.0 477,626 - SM_b20465 0.52 +0.3 477,692 + SM_b20465 0.59 +0.3 477,692 + SM_b20465 0.59 +0.0 477,692 + SM_b20465 0.59 +0.0 477,693 - SM_b20465 0.59 +0.1 477,725 + SM_b20465 0.62 +0.8 477,726 - SM_b20465 0.62 +0.3 477,726 - SM_b20465 0.62 +0.4 477,769 + SM_b20465 0.66 +0.4 477,770 - SM_b20465 0.66 -0.0 477,916 - SM_b20465 0.79 +2.0 478,048 + +0.3 478,048 + +0.8 478,048 + +0.2 478,048 + +0.5 478,049 - -0.4 478,051 - +0.0 478,051 - -0.5 478,173 + +0.4 478,181 + -0.9 478,181 + -0.9 478,186 + -0.9 478,186 + -0.2 478,186 + -1.4 478,186 + +0.8 478,341 - +1.1 478,659 - SM_b20466 0.30 +0.7 478,742 - SM_b20466 0.37 -0.7 478,788 + SM_b20466 0.41 -0.4 478,788 + SM_b20466 0.41 +0.1 478,789 - SM_b20466 0.41 -0.0 478,789 - SM_b20466 0.41 +2.1 478,789 - SM_b20466 0.41 +0.3 478,842 + SM_b20466 0.46 -0.3 478,986 + SM_b20466 0.58 +0.3 478,986 + SM_b20466 0.58 -0.3 478,987 - SM_b20466 0.58 -1.0 478,987 - SM_b20466 0.58 -1.5 478,987 - SM_b20466 0.58 -0.0 478,987 - SM_b20466 0.58 -0.5 479,041 - SM_b20466 0.63 +0.1 479,126 + SM_b20466 0.70 -0.9 479,127 - SM_b20466 0.71 -0.4 479,127 - SM_b20466 0.71 -0.3
Or see this region's nucleotide sequence