Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20435

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20434 and SM_b20435 are separated by 19 nucleotidesSM_b20435 and SM_b20436 are separated by 397 nucleotides SM_b20434: SM_b20434 - hydrolasepeptidase, at 448,384 to 449,565 _b20434 SM_b20435: SM_b20435 - hypothetical protein, at 449,585 to 450,580 _b20435 SM_b20436: SM_b20436 - nitrate transporter protein, at 450,978 to 452,252 _b20436 Position (kb) 449 450 451Strain fitness (log2 ratio) -2 -1 0 1 2at 448.628 kb on - strand, within SM_b20434at 448.666 kb on + strand, within SM_b20434at 448.666 kb on + strand, within SM_b20434at 448.699 kb on + strand, within SM_b20434at 448.699 kb on + strand, within SM_b20434at 448.700 kb on - strand, within SM_b20434at 448.700 kb on - strand, within SM_b20434at 448.765 kb on + strand, within SM_b20434at 448.765 kb on + strand, within SM_b20434at 448.765 kb on + strand, within SM_b20434at 448.765 kb on + strand, within SM_b20434at 448.766 kb on - strand, within SM_b20434at 448.766 kb on - strand, within SM_b20434at 448.766 kb on - strand, within SM_b20434at 448.808 kb on + strand, within SM_b20434at 448.885 kb on + strand, within SM_b20434at 448.985 kb on - strand, within SM_b20434at 448.995 kb on + strand, within SM_b20434at 449.143 kb on + strand, within SM_b20434at 449.144 kb on - strand, within SM_b20434at 449.235 kb on + strand, within SM_b20434at 449.317 kb on + strand, within SM_b20434at 449.318 kb on - strand, within SM_b20434at 449.366 kb on - strand, within SM_b20434at 449.768 kb on + strand, within SM_b20435at 449.768 kb on + strand, within SM_b20435at 449.768 kb on + strand, within SM_b20435at 449.858 kb on + strand, within SM_b20435at 449.966 kb on + strand, within SM_b20435at 450.294 kb on + strand, within SM_b20435at 450.338 kb on - strand, within SM_b20435at 450.438 kb on + strand, within SM_b20435at 450.439 kb on - strand, within SM_b20435at 450.439 kb on - strand, within SM_b20435at 450.517 kb on + strandat 450.648 kb on + strandat 450.808 kb on - strandat 450.974 kb on + strandat 450.974 kb on + strandat 450.974 kb on + strandat 450.974 kb on + strandat 450.975 kb on - strandat 450.975 kb on - strandat 450.975 kb on - strandat 451.008 kb on + strandat 451.008 kb on + strandat 451.008 kb on + strandat 451.009 kb on - strandat 451.009 kb on - strandat 451.010 kb on + strandat 451.011 kb on - strandat 451.011 kb on - strandat 451.072 kb on + strandat 451.105 kb on + strandat 451.106 kb on - strand, within SM_b20436at 451.106 kb on - strand, within SM_b20436at 451.212 kb on + strand, within SM_b20436at 451.279 kb on - strand, within SM_b20436at 451.283 kb on + strand, within SM_b20436at 451.283 kb on + strand, within SM_b20436at 451.283 kb on + strand, within SM_b20436at 451.283 kb on + strand, within SM_b20436at 451.284 kb on - strand, within SM_b20436at 451.284 kb on - strand, within SM_b20436at 451.359 kb on + strand, within SM_b20436at 451.360 kb on - strand, within SM_b20436

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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448,628 - SM_b20434 0.21 -0.2
448,666 + SM_b20434 0.24 -1.5
448,666 + SM_b20434 0.24 +0.5
448,699 + SM_b20434 0.27 +0.9
448,699 + SM_b20434 0.27 +0.4
448,700 - SM_b20434 0.27 -0.4
448,700 - SM_b20434 0.27 +0.6
448,765 + SM_b20434 0.32 +0.7
448,765 + SM_b20434 0.32 +0.4
448,765 + SM_b20434 0.32 +0.3
448,765 + SM_b20434 0.32 +0.2
448,766 - SM_b20434 0.32 +0.4
448,766 - SM_b20434 0.32 -0.3
448,766 - SM_b20434 0.32 -0.1
448,808 + SM_b20434 0.36 -0.1
448,885 + SM_b20434 0.42 +0.8
448,985 - SM_b20434 0.51 +0.1
448,995 + SM_b20434 0.52 -0.5
449,143 + SM_b20434 0.64 +0.2
449,144 - SM_b20434 0.64 +0.3
449,235 + SM_b20434 0.72 +0.0
449,317 + SM_b20434 0.79 +0.6
449,318 - SM_b20434 0.79 -1.2
449,366 - SM_b20434 0.83 -0.7
449,768 + SM_b20435 0.18 +0.4
449,768 + SM_b20435 0.18 -1.1
449,768 + SM_b20435 0.18 -1.0
449,858 + SM_b20435 0.27 +0.0
449,966 + SM_b20435 0.38 +0.0
450,294 + SM_b20435 0.71 -1.4
450,338 - SM_b20435 0.76 -0.6
450,438 + SM_b20435 0.86 -0.9
450,439 - SM_b20435 0.86 -0.4
450,439 - SM_b20435 0.86 -0.2
450,517 + +0.2
450,648 + +0.1
450,808 - -1.9
450,974 + -0.2
450,974 + -0.2
450,974 + +0.5
450,974 + -0.6
450,975 - -0.3
450,975 - -0.4
450,975 - +1.0
451,008 + +0.7
451,008 + +0.6
451,008 + +2.6
451,009 - -0.5
451,009 - +1.4
451,010 + -0.2
451,011 - +0.2
451,011 - +0.1
451,072 + +1.2
451,105 + -0.3
451,106 - SM_b20436 0.10 +0.1
451,106 - SM_b20436 0.10 +1.0
451,212 + SM_b20436 0.18 -0.8
451,279 - SM_b20436 0.24 -0.7
451,283 + SM_b20436 0.24 +0.8
451,283 + SM_b20436 0.24 -0.0
451,283 + SM_b20436 0.24 -0.2
451,283 + SM_b20436 0.24 +0.3
451,284 - SM_b20436 0.24 -0.5
451,284 - SM_b20436 0.24 -2.5
451,359 + SM_b20436 0.30 +0.7
451,360 - SM_b20436 0.30 -0.9

Or see this region's nucleotide sequence