Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20421 and SM_b20422 are separated by 201 nucleotides SM_b20422 and SM_b20423 are separated by 5 nucleotides
SM_b20421: SM_b20421 - transposase, at 434,771 to 435,847
_b20421
SM_b20422: SM_b20422 - oxidoreductase, at 436,049 to 437,128
_b20422
SM_b20423: SM_b20423 - hypothetical protein, at 437,134 to 438,510
_b20423
Position (kb) 436
437
438 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 435.951 kb on - strand at 435.951 kb on - strand at 435.951 kb on - strand at 435.951 kb on - strand at 435.951 kb on - strand at 435.995 kb on + strand at 435.995 kb on + strand at 435.995 kb on + strand at 435.996 kb on - strand at 435.996 kb on - strand at 435.996 kb on - strand at 435.998 kb on - strand at 436.045 kb on - strand at 436.051 kb on - strand at 436.171 kb on + strand, within SM_b20422 at 436.172 kb on - strand, within SM_b20422 at 436.174 kb on - strand, within SM_b20422 at 436.242 kb on + strand, within SM_b20422 at 436.242 kb on + strand, within SM_b20422 at 436.242 kb on + strand, within SM_b20422 at 436.243 kb on - strand, within SM_b20422 at 436.299 kb on + strand, within SM_b20422 at 436.299 kb on + strand, within SM_b20422 at 436.619 kb on - strand, within SM_b20422 at 436.624 kb on - strand, within SM_b20422 at 436.624 kb on - strand, within SM_b20422 at 436.703 kb on - strand, within SM_b20422 at 436.705 kb on - strand, within SM_b20422 at 436.741 kb on - strand, within SM_b20422 at 436.776 kb on + strand, within SM_b20422 at 436.846 kb on + strand, within SM_b20422 at 436.972 kb on + strand, within SM_b20422 at 436.973 kb on - strand, within SM_b20422 at 437.037 kb on - strand at 437.050 kb on - strand at 437.050 kb on - strand at 437.147 kb on - strand at 437.628 kb on - strand, within SM_b20423 at 437.678 kb on + strand, within SM_b20423 at 437.748 kb on + strand, within SM_b20423 at 437.753 kb on + strand, within SM_b20423 at 437.753 kb on + strand, within SM_b20423 at 437.754 kb on - strand, within SM_b20423 at 437.754 kb on - strand, within SM_b20423 at 437.786 kb on + strand, within SM_b20423 at 437.900 kb on + strand, within SM_b20423 at 437.901 kb on - strand, within SM_b20423 at 437.948 kb on + strand, within SM_b20423 at 437.948 kb on + strand, within SM_b20423 at 437.949 kb on - strand, within SM_b20423 at 437.952 kb on - strand, within SM_b20423 at 438.053 kb on + strand, within SM_b20423 at 438.111 kb on - strand, within SM_b20423 at 438.111 kb on - strand, within SM_b20423 at 438.111 kb on - strand, within SM_b20423 at 438.113 kb on + strand, within SM_b20423
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 435,951 - +1.2 435,951 - +0.2 435,951 - -0.6 435,951 - +1.1 435,951 - +0.1 435,995 + -1.4 435,995 + +0.0 435,995 + -0.0 435,996 - -0.6 435,996 - -0.1 435,996 - +0.4 435,998 - +0.8 436,045 - +0.1 436,051 - +0.3 436,171 + SM_b20422 0.11 -0.1 436,172 - SM_b20422 0.11 -0.4 436,174 - SM_b20422 0.12 +0.1 436,242 + SM_b20422 0.18 +0.1 436,242 + SM_b20422 0.18 -0.7 436,242 + SM_b20422 0.18 -1.3 436,243 - SM_b20422 0.18 +0.0 436,299 + SM_b20422 0.23 -0.0 436,299 + SM_b20422 0.23 -0.2 436,619 - SM_b20422 0.53 -0.7 436,624 - SM_b20422 0.53 -1.6 436,624 - SM_b20422 0.53 -0.2 436,703 - SM_b20422 0.61 +2.1 436,705 - SM_b20422 0.61 +0.1 436,741 - SM_b20422 0.64 -0.0 436,776 + SM_b20422 0.67 -0.3 436,846 + SM_b20422 0.74 -0.9 436,972 + SM_b20422 0.85 -0.9 436,973 - SM_b20422 0.86 -0.4 437,037 - -0.0 437,050 - -0.2 437,050 - +0.1 437,147 - -0.7 437,628 - SM_b20423 0.36 +0.5 437,678 + SM_b20423 0.40 +0.1 437,748 + SM_b20423 0.45 -0.6 437,753 + SM_b20423 0.45 +4.4 437,753 + SM_b20423 0.45 -1.2 437,754 - SM_b20423 0.45 -0.5 437,754 - SM_b20423 0.45 +0.8 437,786 + SM_b20423 0.47 -1.2 437,900 + SM_b20423 0.56 -0.1 437,901 - SM_b20423 0.56 +1.4 437,948 + SM_b20423 0.59 -0.2 437,948 + SM_b20423 0.59 +0.3 437,949 - SM_b20423 0.59 +0.1 437,952 - SM_b20423 0.59 +1.2 438,053 + SM_b20423 0.67 +0.3 438,111 - SM_b20423 0.71 -0.1 438,111 - SM_b20423 0.71 +0.3 438,111 - SM_b20423 0.71 +0.1 438,113 + SM_b20423 0.71 -2.5
Or see this region's nucleotide sequence