Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20402 and SM_b20403 are separated by 2 nucleotides SM_b20403 and SM_b20404 overlap by 1 nucleotides
SM_b20402: SM_b20402 - alcohol dehydrogenase cytochrome c subunit precursor, at 414,971 to 416,359
_b20402
SM_b20403: SM_b20403 - oxidoreductase subunit protein, at 416,362 to 416,859
_b20403
SM_b20404: SM_b20404 - aldehyde dehydrogenase, at 416,859 to 419,099
_b20404
Position (kb) 416
417 Strain fitness (log2 ratio) -2
-1
0
1 at 415.388 kb on + strand, within SM_b20402 at 415.556 kb on + strand, within SM_b20402 at 415.595 kb on - strand, within SM_b20402 at 415.670 kb on + strand, within SM_b20402 at 415.730 kb on + strand, within SM_b20402 at 415.841 kb on + strand, within SM_b20402 at 415.841 kb on + strand, within SM_b20402 at 415.841 kb on + strand, within SM_b20402 at 415.842 kb on - strand, within SM_b20402 at 415.943 kb on - strand, within SM_b20402 at 415.995 kb on - strand, within SM_b20402 at 416.210 kb on + strand, within SM_b20402 at 416.210 kb on + strand, within SM_b20402 at 416.210 kb on + strand, within SM_b20402 at 416.210 kb on + strand, within SM_b20402 at 416.210 kb on + strand, within SM_b20402 at 416.210 kb on + strand, within SM_b20402 at 416.211 kb on - strand, within SM_b20402 at 416.211 kb on - strand, within SM_b20402 at 416.211 kb on - strand, within SM_b20402 at 416.288 kb on + strand at 416.288 kb on + strand at 416.288 kb on + strand at 416.289 kb on - strand at 416.429 kb on - strand, within SM_b20403 at 416.429 kb on - strand, within SM_b20403 at 416.657 kb on - strand, within SM_b20403 at 416.773 kb on - strand, within SM_b20403 at 417.406 kb on + strand, within SM_b20404 at 417.444 kb on - strand, within SM_b20404 at 417.514 kb on - strand, within SM_b20404 at 417.514 kb on - strand, within SM_b20404 at 417.514 kb on - strand, within SM_b20404 at 417.709 kb on + strand, within SM_b20404 at 417.710 kb on - strand, within SM_b20404 at 417.710 kb on - strand, within SM_b20404
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 415,388 + SM_b20402 0.30 +0.5 415,556 + SM_b20402 0.42 +1.1 415,595 - SM_b20402 0.45 -0.0 415,670 + SM_b20402 0.50 -1.3 415,730 + SM_b20402 0.55 -1.5 415,841 + SM_b20402 0.63 -0.7 415,841 + SM_b20402 0.63 +0.1 415,841 + SM_b20402 0.63 -0.5 415,842 - SM_b20402 0.63 +0.5 415,943 - SM_b20402 0.70 +0.2 415,995 - SM_b20402 0.74 -0.7 416,210 + SM_b20402 0.89 -1.8 416,210 + SM_b20402 0.89 -0.1 416,210 + SM_b20402 0.89 -0.4 416,210 + SM_b20402 0.89 +0.7 416,210 + SM_b20402 0.89 -0.7 416,210 + SM_b20402 0.89 +0.3 416,211 - SM_b20402 0.89 -1.8 416,211 - SM_b20402 0.89 -0.5 416,211 - SM_b20402 0.89 +0.5 416,288 + +0.6 416,288 + -0.7 416,288 + +0.3 416,289 - -0.0 416,429 - SM_b20403 0.13 -0.6 416,429 - SM_b20403 0.13 -0.6 416,657 - SM_b20403 0.59 -0.2 416,773 - SM_b20403 0.83 -1.0 417,406 + SM_b20404 0.24 +0.5 417,444 - SM_b20404 0.26 -0.4 417,514 - SM_b20404 0.29 +0.6 417,514 - SM_b20404 0.29 -0.3 417,514 - SM_b20404 0.29 +0.2 417,709 + SM_b20404 0.38 -0.2 417,710 - SM_b20404 0.38 -1.3 417,710 - SM_b20404 0.38 +0.3
Or see this region's nucleotide sequence