Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20396 and SM_b20397 overlap by 4 nucleotides SM_b20397 and SM_b20398 are separated by 166 nucleotides SM_b20398 and SM_b20399 are separated by 83 nucleotides SM_b20399 and SM_b20400 are separated by 9 nucleotides SM_b20400 and SM_b20401 are separated by 26 nucleotides
SM_b20396: SM_b20396 - dehydrogenase, at 411,473 to 412,456
_b20396
SM_b20397: SM_b20397 - oxidoreductase, at 412,453 to 413,019
_b20397
SM_b20398: SM_b20398 - hypothetical protein, at 413,186 to 413,680
_b20398
SM_b20399: SM_b20399 - hypothetical protein, at 413,764 to 414,354
_b20399
SM_b20400: SM_b20400 - hypothetical protein, at 414,364 to 414,627
_b20400
SM_b20401: SM_b20401 - hypothetical protein, at 414,654 to 414,827
_b20401
Position (kb) 413
414 Strain fitness (log2 ratio) -2
-1
0
1
2 at 412.243 kb on + strand, within SM_b20396 at 412.243 kb on + strand, within SM_b20396 at 412.244 kb on - strand, within SM_b20396 at 412.244 kb on - strand, within SM_b20396 at 412.244 kb on - strand, within SM_b20396 at 412.441 kb on - strand at 412.508 kb on + strand at 412.508 kb on + strand at 412.509 kb on - strand at 412.509 kb on - strand at 412.509 kb on - strand at 412.670 kb on + strand, within SM_b20397 at 412.696 kb on + strand, within SM_b20397 at 412.696 kb on + strand, within SM_b20397 at 412.697 kb on - strand, within SM_b20397 at 412.870 kb on - strand, within SM_b20397 at 413.132 kb on - strand at 413.192 kb on + strand at 413.192 kb on + strand at 413.193 kb on - strand at 413.193 kb on - strand at 413.374 kb on + strand, within SM_b20398 at 413.471 kb on + strand, within SM_b20398 at 413.472 kb on - strand, within SM_b20398 at 413.517 kb on - strand, within SM_b20398 at 413.656 kb on + strand at 413.695 kb on - strand at 413.721 kb on - strand at 413.750 kb on + strand at 413.751 kb on - strand at 413.777 kb on + strand at 413.777 kb on + strand at 413.778 kb on - strand at 413.830 kb on - strand, within SM_b20399 at 413.947 kb on + strand, within SM_b20399 at 413.948 kb on - strand, within SM_b20399 at 414.076 kb on + strand, within SM_b20399 at 414.077 kb on - strand, within SM_b20399 at 414.077 kb on - strand, within SM_b20399 at 414.232 kb on + strand, within SM_b20399 at 414.232 kb on + strand, within SM_b20399 at 414.233 kb on - strand, within SM_b20399 at 414.233 kb on - strand, within SM_b20399 at 414.233 kb on - strand, within SM_b20399 at 414.285 kb on - strand, within SM_b20399 at 414.285 kb on - strand, within SM_b20399 at 414.422 kb on + strand, within SM_b20400 at 414.423 kb on - strand, within SM_b20400 at 414.423 kb on - strand, within SM_b20400 at 414.539 kb on + strand, within SM_b20400 at 414.539 kb on + strand, within SM_b20400 at 414.567 kb on - strand, within SM_b20400 at 414.567 kb on - strand, within SM_b20400 at 414.618 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 412,243 + SM_b20396 0.78 -1.1 412,243 + SM_b20396 0.78 -0.3 412,244 - SM_b20396 0.78 -0.3 412,244 - SM_b20396 0.78 +0.1 412,244 - SM_b20396 0.78 +2.7 412,441 - -0.1 412,508 + -0.1 412,508 + -0.4 412,509 - -0.6 412,509 - +0.5 412,509 - +0.9 412,670 + SM_b20397 0.38 -1.2 412,696 + SM_b20397 0.43 +0.1 412,696 + SM_b20397 0.43 -1.1 412,697 - SM_b20397 0.43 +0.5 412,870 - SM_b20397 0.74 -0.8 413,132 - -0.1 413,192 + +0.9 413,192 + +0.0 413,193 - +0.0 413,193 - +0.5 413,374 + SM_b20398 0.38 -1.1 413,471 + SM_b20398 0.58 -0.9 413,472 - SM_b20398 0.58 -0.9 413,517 - SM_b20398 0.67 -0.2 413,656 + +1.9 413,695 - -0.8 413,721 - +1.3 413,750 + -0.6 413,751 - -0.8 413,777 + -0.4 413,777 + -0.1 413,778 - -0.3 413,830 - SM_b20399 0.11 -0.2 413,947 + SM_b20399 0.31 +2.4 413,948 - SM_b20399 0.31 +0.5 414,076 + SM_b20399 0.53 +0.7 414,077 - SM_b20399 0.53 -0.2 414,077 - SM_b20399 0.53 -0.4 414,232 + SM_b20399 0.79 -0.9 414,232 + SM_b20399 0.79 -0.3 414,233 - SM_b20399 0.79 -0.8 414,233 - SM_b20399 0.79 +0.5 414,233 - SM_b20399 0.79 +1.7 414,285 - SM_b20399 0.88 +0.4 414,285 - SM_b20399 0.88 +0.2 414,422 + SM_b20400 0.22 +0.1 414,423 - SM_b20400 0.22 +0.2 414,423 - SM_b20400 0.22 -1.3 414,539 + SM_b20400 0.66 +1.5 414,539 + SM_b20400 0.66 -2.3 414,567 - SM_b20400 0.77 +0.5 414,567 - SM_b20400 0.77 +1.1 414,618 - +0.3
Or see this region's nucleotide sequence