Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20379 and SM_b20380 are separated by 30 nucleotides SM_b20380 and SM_b20381 are separated by 15 nucleotides SM_b20381 and SM_b20382 overlap by 4 nucleotides
SM_b20379: SM_b20379 - aminotransferase, at 389,955 to 391,340
_b20379
SM_b20380: SM_b20380 - ABC transporter ATP-binding protein, at 391,371 to 392,420
_b20380
SM_b20381: SM_b20381 - ABC transporter permease, at 392,436 to 393,266
_b20381
SM_b20382: SM_b20382 - ABC transporter permease, at 393,263 to 394,114
_b20382
Position (kb) 391
392
393 Strain fitness (log2 ratio) -2
-1
0
1 at 390.463 kb on + strand, within SM_b20379 at 390.464 kb on - strand, within SM_b20379 at 390.464 kb on - strand, within SM_b20379 at 390.464 kb on - strand, within SM_b20379 at 390.589 kb on + strand, within SM_b20379 at 390.590 kb on - strand, within SM_b20379 at 390.805 kb on - strand, within SM_b20379 at 390.889 kb on + strand, within SM_b20379 at 390.890 kb on - strand, within SM_b20379 at 390.947 kb on - strand, within SM_b20379 at 391.093 kb on + strand, within SM_b20379 at 391.093 kb on + strand, within SM_b20379 at 391.094 kb on - strand, within SM_b20379 at 391.094 kb on - strand, within SM_b20379 at 391.192 kb on + strand, within SM_b20379 at 391.219 kb on + strand at 391.219 kb on + strand at 391.219 kb on + strand at 391.219 kb on + strand at 391.219 kb on + strand at 391.219 kb on + strand at 391.220 kb on - strand at 391.220 kb on - strand at 391.220 kb on - strand at 391.220 kb on - strand at 391.220 kb on - strand at 391.220 kb on - strand at 391.220 kb on - strand at 391.513 kb on + strand, within SM_b20380 at 391.747 kb on + strand, within SM_b20380 at 391.846 kb on + strand, within SM_b20380 at 391.846 kb on + strand, within SM_b20380 at 391.847 kb on - strand, within SM_b20380 at 391.847 kb on - strand, within SM_b20380 at 391.847 kb on - strand, within SM_b20380 at 391.847 kb on - strand, within SM_b20380 at 391.847 kb on - strand, within SM_b20380 at 392.162 kb on - strand, within SM_b20380 at 392.162 kb on - strand, within SM_b20380 at 392.162 kb on - strand, within SM_b20380 at 392.363 kb on + strand at 392.364 kb on - strand at 392.364 kb on - strand at 392.377 kb on + strand at 392.378 kb on - strand at 392.378 kb on - strand at 392.378 kb on - strand at 392.378 kb on - strand at 392.378 kb on - strand at 392.425 kb on - strand at 392.425 kb on - strand at 392.425 kb on - strand at 392.559 kb on + strand, within SM_b20381 at 392.887 kb on + strand, within SM_b20381 at 392.887 kb on + strand, within SM_b20381 at 392.917 kb on + strand, within SM_b20381 at 392.917 kb on + strand, within SM_b20381 at 392.917 kb on + strand, within SM_b20381 at 392.917 kb on + strand, within SM_b20381 at 392.918 kb on - strand, within SM_b20381 at 392.918 kb on - strand, within SM_b20381 at 392.924 kb on - strand, within SM_b20381 at 392.924 kb on - strand, within SM_b20381 at 392.982 kb on - strand, within SM_b20381 at 393.130 kb on + strand, within SM_b20381 at 393.131 kb on - strand, within SM_b20381 at 393.143 kb on + strand, within SM_b20381 at 393.312 kb on + strand at 393.312 kb on + strand at 393.313 kb on - strand at 393.313 kb on - strand at 393.313 kb on - strand at 393.404 kb on + strand, within SM_b20382 at 393.404 kb on + strand, within SM_b20382 at 393.405 kb on - strand, within SM_b20382
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 390,463 + SM_b20379 0.37 +0.4 390,464 - SM_b20379 0.37 -0.3 390,464 - SM_b20379 0.37 -0.6 390,464 - SM_b20379 0.37 -0.8 390,589 + SM_b20379 0.46 -0.1 390,590 - SM_b20379 0.46 +0.0 390,805 - SM_b20379 0.61 -0.1 390,889 + SM_b20379 0.67 +0.9 390,890 - SM_b20379 0.67 -0.3 390,947 - SM_b20379 0.72 -0.6 391,093 + SM_b20379 0.82 +0.1 391,093 + SM_b20379 0.82 +0.9 391,094 - SM_b20379 0.82 -1.5 391,094 - SM_b20379 0.82 -0.2 391,192 + SM_b20379 0.89 +0.4 391,219 + -0.7 391,219 + -0.8 391,219 + +1.6 391,219 + +1.5 391,219 + +0.0 391,219 + -0.1 391,220 - +0.6 391,220 - -0.5 391,220 - -0.3 391,220 - +0.6 391,220 - -0.8 391,220 - -0.7 391,220 - -1.6 391,513 + SM_b20380 0.14 +0.5 391,747 + SM_b20380 0.36 -0.7 391,846 + SM_b20380 0.45 -1.4 391,846 + SM_b20380 0.45 -0.4 391,847 - SM_b20380 0.45 -1.4 391,847 - SM_b20380 0.45 -0.4 391,847 - SM_b20380 0.45 -0.6 391,847 - SM_b20380 0.45 -0.4 391,847 - SM_b20380 0.45 +0.0 392,162 - SM_b20380 0.75 -0.1 392,162 - SM_b20380 0.75 -2.7 392,162 - SM_b20380 0.75 +0.2 392,363 + -1.6 392,364 - -0.6 392,364 - -0.2 392,377 + -0.2 392,378 - +0.4 392,378 - +1.2 392,378 - -0.2 392,378 - +0.3 392,378 - -0.1 392,425 - +1.5 392,425 - +1.1 392,425 - -0.8 392,559 + SM_b20381 0.15 +0.6 392,887 + SM_b20381 0.54 +0.1 392,887 + SM_b20381 0.54 -0.9 392,917 + SM_b20381 0.58 +1.4 392,917 + SM_b20381 0.58 -0.1 392,917 + SM_b20381 0.58 -1.3 392,917 + SM_b20381 0.58 -0.2 392,918 - SM_b20381 0.58 -0.2 392,918 - SM_b20381 0.58 -0.2 392,924 - SM_b20381 0.59 -0.3 392,924 - SM_b20381 0.59 -0.6 392,982 - SM_b20381 0.66 +0.6 393,130 + SM_b20381 0.84 -1.1 393,131 - SM_b20381 0.84 +0.5 393,143 + SM_b20381 0.85 -1.1 393,312 + +0.0 393,312 + -0.5 393,313 - +0.5 393,313 - -0.5 393,313 - -0.4 393,404 + SM_b20382 0.17 +0.5 393,404 + SM_b20382 0.17 -1.2 393,405 - SM_b20382 0.17 -0.7
Or see this region's nucleotide sequence