Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20342 and SM_b20343 are separated by 1 nucleotides SM_b20343 and SM_b20344 are separated by 276 nucleotides SM_b20344 and SM_b20345 are separated by 136 nucleotides
SM_b20342: SM_b20342 - isoquinoline 1-oxidoreductase, at 346,305 to 348,518
_b20342
SM_b20343: SM_b20343 - isoquinoline 1-oxidoreductase, at 348,520 to 348,978
_b20343
SM_b20344: SM_b20344 - transcriptional regulator, at 349,255 to 350,211
_b20344
SM_b20345: SM_b20345 - efflux protein, at 350,348 to 353,497
_b20345
Position (kb) 349
350
351 Strain fitness (log2 ratio) -1
0
1
2 at 348.260 kb on + strand, within SM_b20342 at 348.262 kb on + strand, within SM_b20342 at 348.263 kb on - strand, within SM_b20342 at 348.513 kb on + strand at 348.572 kb on + strand, within SM_b20343 at 348.572 kb on + strand, within SM_b20343 at 348.572 kb on + strand, within SM_b20343 at 348.728 kb on - strand, within SM_b20343 at 348.833 kb on + strand, within SM_b20343 at 348.833 kb on + strand, within SM_b20343 at 348.940 kb on + strand at 348.941 kb on - strand at 348.966 kb on + strand at 348.966 kb on + strand at 349.127 kb on + strand at 349.128 kb on - strand at 349.153 kb on + strand at 349.154 kb on - strand at 349.154 kb on - strand at 349.177 kb on - strand at 349.196 kb on + strand at 349.197 kb on - strand at 349.207 kb on - strand at 349.521 kb on + strand, within SM_b20344 at 349.583 kb on - strand, within SM_b20344 at 349.583 kb on - strand, within SM_b20344 at 349.583 kb on - strand, within SM_b20344 at 349.689 kb on + strand, within SM_b20344 at 349.822 kb on + strand, within SM_b20344 at 349.822 kb on + strand, within SM_b20344 at 349.822 kb on + strand, within SM_b20344 at 349.822 kb on + strand, within SM_b20344 at 349.823 kb on - strand, within SM_b20344 at 349.887 kb on - strand, within SM_b20344 at 349.887 kb on - strand, within SM_b20344 at 349.887 kb on - strand, within SM_b20344 at 349.968 kb on - strand, within SM_b20344 at 350.037 kb on - strand, within SM_b20344 at 350.037 kb on - strand, within SM_b20344 at 350.037 kb on - strand, within SM_b20344 at 350.037 kb on - strand, within SM_b20344 at 350.039 kb on - strand, within SM_b20344 at 350.039 kb on - strand, within SM_b20344 at 350.075 kb on + strand, within SM_b20344 at 350.238 kb on + strand at 350.243 kb on - strand at 350.408 kb on + strand at 350.598 kb on - strand at 350.598 kb on - strand at 350.959 kb on - strand, within SM_b20345 at 351.065 kb on - strand, within SM_b20345 at 351.065 kb on - strand, within SM_b20345 at 351.165 kb on + strand, within SM_b20345
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 348,260 + SM_b20342 0.88 -0.5 348,262 + SM_b20342 0.88 +2.0 348,263 - SM_b20342 0.88 +1.0 348,513 + +0.7 348,572 + SM_b20343 0.11 -1.1 348,572 + SM_b20343 0.11 -0.3 348,572 + SM_b20343 0.11 -0.4 348,728 - SM_b20343 0.45 +0.3 348,833 + SM_b20343 0.68 +0.5 348,833 + SM_b20343 0.68 +0.6 348,940 + +0.9 348,941 - +0.6 348,966 + -0.6 348,966 + -0.6 349,127 + -0.3 349,128 - +0.4 349,153 + +0.2 349,154 - +0.6 349,154 - +0.4 349,177 - -0.2 349,196 + +0.6 349,197 - -0.5 349,207 - -0.6 349,521 + SM_b20344 0.28 +1.2 349,583 - SM_b20344 0.34 +0.3 349,583 - SM_b20344 0.34 -0.1 349,583 - SM_b20344 0.34 -0.6 349,689 + SM_b20344 0.45 +0.9 349,822 + SM_b20344 0.59 -0.3 349,822 + SM_b20344 0.59 -0.1 349,822 + SM_b20344 0.59 +0.5 349,822 + SM_b20344 0.59 +0.6 349,823 - SM_b20344 0.59 -0.6 349,887 - SM_b20344 0.66 -1.6 349,887 - SM_b20344 0.66 -1.2 349,887 - SM_b20344 0.66 -0.9 349,968 - SM_b20344 0.75 -0.8 350,037 - SM_b20344 0.82 +0.9 350,037 - SM_b20344 0.82 -0.2 350,037 - SM_b20344 0.82 -0.9 350,037 - SM_b20344 0.82 -0.1 350,039 - SM_b20344 0.82 -1.1 350,039 - SM_b20344 0.82 -0.2 350,075 + SM_b20344 0.86 -0.9 350,238 + +0.2 350,243 - +0.5 350,408 + -0.4 350,598 - +1.6 350,598 - +1.4 350,959 - SM_b20345 0.19 -0.2 351,065 - SM_b20345 0.23 +1.5 351,065 - SM_b20345 0.23 +0.7 351,165 + SM_b20345 0.26 -0.5
Or see this region's nucleotide sequence