Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20334 and SM_b20335 are separated by 220 nucleotides SM_b20335 and SM_b20336 are separated by 49 nucleotides SM_b20336 and SM_b20337 are separated by 57 nucleotides
SM_b20334: SM_b20334 - hypothetical protein, at 339,465 to 340,376
_b20334
SM_b20335: SM_b20335 - hypothetical protein, at 340,597 to 341,877
_b20335
SM_b20336: SM_b20336 - hypothetical protein, at 341,927 to 342,718
_b20336
SM_b20337: SM_b20337 - transcriptional regulator, at 342,776 to 343,387
_b20337
Position (kb) 340
341
342 Strain fitness (log2 ratio) -2
-1
0
1
2 at 339.683 kb on - strand, within SM_b20334 at 339.737 kb on + strand, within SM_b20334 at 339.737 kb on + strand, within SM_b20334 at 339.738 kb on - strand, within SM_b20334 at 339.738 kb on - strand, within SM_b20334 at 339.739 kb on + strand, within SM_b20334 at 339.739 kb on + strand, within SM_b20334 at 339.740 kb on - strand, within SM_b20334 at 339.740 kb on - strand, within SM_b20334 at 339.755 kb on - strand, within SM_b20334 at 339.843 kb on + strand, within SM_b20334 at 339.844 kb on - strand, within SM_b20334 at 339.862 kb on - strand, within SM_b20334 at 339.862 kb on - strand, within SM_b20334 at 339.989 kb on + strand, within SM_b20334 at 339.989 kb on + strand, within SM_b20334 at 339.989 kb on + strand, within SM_b20334 at 340.022 kb on + strand, within SM_b20334 at 340.023 kb on - strand, within SM_b20334 at 340.023 kb on - strand, within SM_b20334 at 340.086 kb on + strand, within SM_b20334 at 340.087 kb on - strand, within SM_b20334 at 340.126 kb on - strand, within SM_b20334 at 340.281 kb on + strand, within SM_b20334 at 340.282 kb on - strand, within SM_b20334 at 340.282 kb on - strand, within SM_b20334 at 340.282 kb on - strand, within SM_b20334 at 340.375 kb on - strand at 340.405 kb on - strand at 340.459 kb on + strand at 340.460 kb on - strand at 340.460 kb on - strand at 340.475 kb on + strand at 340.619 kb on + strand at 340.620 kb on - strand at 340.646 kb on + strand at 340.652 kb on - strand at 341.065 kb on + strand, within SM_b20335 at 341.065 kb on + strand, within SM_b20335 at 341.127 kb on + strand, within SM_b20335 at 341.127 kb on + strand, within SM_b20335 at 341.127 kb on + strand, within SM_b20335 at 341.127 kb on + strand, within SM_b20335 at 341.127 kb on + strand, within SM_b20335 at 341.127 kb on + strand, within SM_b20335 at 341.127 kb on + strand, within SM_b20335 at 341.128 kb on - strand, within SM_b20335 at 341.128 kb on - strand, within SM_b20335 at 341.128 kb on - strand, within SM_b20335 at 341.128 kb on - strand, within SM_b20335 at 341.128 kb on - strand, within SM_b20335 at 341.169 kb on + strand, within SM_b20335 at 341.169 kb on + strand, within SM_b20335 at 341.170 kb on - strand, within SM_b20335 at 341.173 kb on + strand, within SM_b20335 at 341.173 kb on + strand, within SM_b20335 at 341.173 kb on + strand, within SM_b20335 at 341.173 kb on + strand, within SM_b20335 at 341.195 kb on - strand, within SM_b20335 at 341.277 kb on + strand, within SM_b20335 at 341.536 kb on + strand, within SM_b20335 at 341.549 kb on + strand, within SM_b20335 at 341.648 kb on + strand, within SM_b20335 at 341.649 kb on - strand, within SM_b20335 at 341.790 kb on - strand at 341.875 kb on + strand at 341.911 kb on - strand at 341.924 kb on - strand at 342.003 kb on + strand at 342.003 kb on + strand at 342.004 kb on - strand at 342.005 kb on + strand at 342.212 kb on + strand, within SM_b20336 at 342.213 kb on - strand, within SM_b20336 at 342.235 kb on - strand, within SM_b20336 at 342.235 kb on - strand, within SM_b20336 at 342.235 kb on - strand, within SM_b20336 at 342.235 kb on - strand, within SM_b20336 at 342.236 kb on + strand, within SM_b20336 at 342.236 kb on + strand, within SM_b20336 at 342.236 kb on + strand, within SM_b20336 at 342.236 kb on + strand, within SM_b20336 at 342.236 kb on + strand, within SM_b20336 at 342.237 kb on - strand, within SM_b20336 at 342.237 kb on - strand, within SM_b20336 at 342.237 kb on - strand, within SM_b20336 at 342.237 kb on - strand, within SM_b20336 at 342.237 kb on - strand, within SM_b20336 at 342.344 kb on + strand, within SM_b20336 at 342.345 kb on - strand at 342.345 kb on - strand, within SM_b20336 at 342.436 kb on + strand, within SM_b20336 at 342.497 kb on + strand, within SM_b20336 at 342.497 kb on + strand, within SM_b20336 at 342.518 kb on + strand, within SM_b20336 at 342.716 kb on + strand at 342.716 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 339,683 - SM_b20334 0.24 -0.8 339,737 + SM_b20334 0.30 +0.4 339,737 + SM_b20334 0.30 +0.7 339,738 - SM_b20334 0.30 -0.1 339,738 - SM_b20334 0.30 +0.2 339,739 + SM_b20334 0.30 -2.5 339,739 + SM_b20334 0.30 -1.1 339,740 - SM_b20334 0.30 -0.7 339,740 - SM_b20334 0.30 -0.0 339,755 - SM_b20334 0.32 +0.9 339,843 + SM_b20334 0.41 -1.5 339,844 - SM_b20334 0.42 +0.0 339,862 - SM_b20334 0.44 -0.0 339,862 - SM_b20334 0.44 -1.0 339,989 + SM_b20334 0.57 +1.0 339,989 + SM_b20334 0.57 +0.4 339,989 + SM_b20334 0.57 -0.1 340,022 + SM_b20334 0.61 +0.1 340,023 - SM_b20334 0.61 +1.3 340,023 - SM_b20334 0.61 +0.4 340,086 + SM_b20334 0.68 +0.8 340,087 - SM_b20334 0.68 -0.7 340,126 - SM_b20334 0.72 +0.3 340,281 + SM_b20334 0.89 -0.2 340,282 - SM_b20334 0.90 +0.6 340,282 - SM_b20334 0.90 -0.3 340,282 - SM_b20334 0.90 +0.1 340,375 - -1.0 340,405 - +0.9 340,459 + -0.4 340,460 - +0.1 340,460 - -0.3 340,475 + -0.6 340,619 + -0.7 340,620 - +0.4 340,646 + +1.0 340,652 - +0.0 341,065 + SM_b20335 0.37 +0.8 341,065 + SM_b20335 0.37 +0.0 341,127 + SM_b20335 0.41 +0.3 341,127 + SM_b20335 0.41 -0.0 341,127 + SM_b20335 0.41 -1.4 341,127 + SM_b20335 0.41 +1.7 341,127 + SM_b20335 0.41 +0.2 341,127 + SM_b20335 0.41 -0.0 341,127 + SM_b20335 0.41 +0.2 341,128 - SM_b20335 0.41 +0.6 341,128 - SM_b20335 0.41 -0.6 341,128 - SM_b20335 0.41 -1.5 341,128 - SM_b20335 0.41 -1.5 341,128 - SM_b20335 0.41 -0.3 341,169 + SM_b20335 0.45 -0.6 341,169 + SM_b20335 0.45 +0.3 341,170 - SM_b20335 0.45 +0.7 341,173 + SM_b20335 0.45 -0.0 341,173 + SM_b20335 0.45 +1.0 341,173 + SM_b20335 0.45 +0.1 341,173 + SM_b20335 0.45 -0.0 341,195 - SM_b20335 0.47 -1.2 341,277 + SM_b20335 0.53 -0.8 341,536 + SM_b20335 0.73 +0.6 341,549 + SM_b20335 0.74 +0.2 341,648 + SM_b20335 0.82 +0.0 341,649 - SM_b20335 0.82 +0.6 341,790 - -2.3 341,875 + -1.5 341,911 - +0.3 341,924 - -0.6 342,003 + +0.4 342,003 + -0.7 342,004 - +0.2 342,005 + +0.0 342,212 + SM_b20336 0.36 -0.3 342,213 - SM_b20336 0.36 +0.1 342,235 - SM_b20336 0.39 +0.4 342,235 - SM_b20336 0.39 -0.1 342,235 - SM_b20336 0.39 -0.2 342,235 - SM_b20336 0.39 -0.9 342,236 + SM_b20336 0.39 -0.2 342,236 + SM_b20336 0.39 -0.1 342,236 + SM_b20336 0.39 -0.2 342,236 + SM_b20336 0.39 +1.8 342,236 + SM_b20336 0.39 -0.9 342,237 - SM_b20336 0.39 -0.5 342,237 - SM_b20336 0.39 -0.2 342,237 - SM_b20336 0.39 +0.7 342,237 - SM_b20336 0.39 +0.5 342,237 - SM_b20336 0.39 +0.3 342,344 + SM_b20336 0.53 -0.4 342,345 - +0.7 342,345 - SM_b20336 0.53 +0.9 342,436 + SM_b20336 0.64 -0.2 342,497 + SM_b20336 0.72 -0.0 342,497 + SM_b20336 0.72 +0.1 342,518 + SM_b20336 0.75 -0.3 342,716 + -0.6 342,716 + +0.2
Or see this region's nucleotide sequence