Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20289 and SM_b20290 are separated by 151 nucleotides SM_b20290 and SM_b20291 are separated by 7 nucleotides
SM_b20289: SM_b20289 - permease, at 294,233 to 295,582
_b20289
SM_b20290: SM_b20290 - transcriptional regulator, at 295,734 to 296,729
_b20290
SM_b20291: SM_b20291 - hypothetical protein, at 296,737 to 299,220
_b20291
Position (kb) 295
296
297 Strain fitness (log2 ratio) -2
-1
0
1
2 at 294.937 kb on + strand, within SM_b20289 at 294.937 kb on + strand, within SM_b20289 at 294.937 kb on + strand, within SM_b20289 at 294.937 kb on + strand, within SM_b20289 at 294.937 kb on + strand, within SM_b20289 at 294.937 kb on + strand, within SM_b20289 at 294.938 kb on - strand, within SM_b20289 at 294.938 kb on - strand, within SM_b20289 at 294.939 kb on + strand, within SM_b20289 at 294.939 kb on + strand, within SM_b20289 at 294.939 kb on + strand, within SM_b20289 at 295.122 kb on + strand, within SM_b20289 at 295.122 kb on + strand, within SM_b20289 at 295.123 kb on - strand, within SM_b20289 at 295.139 kb on + strand, within SM_b20289 at 295.140 kb on - strand, within SM_b20289 at 295.185 kb on + strand, within SM_b20289 at 295.205 kb on + strand, within SM_b20289 at 295.224 kb on + strand, within SM_b20289 at 295.224 kb on + strand, within SM_b20289 at 295.224 kb on + strand, within SM_b20289 at 295.225 kb on - strand, within SM_b20289 at 295.225 kb on - strand, within SM_b20289 at 295.559 kb on - strand at 295.647 kb on - strand at 295.647 kb on - strand at 295.818 kb on + strand at 295.818 kb on + strand at 295.819 kb on - strand at 296.158 kb on + strand, within SM_b20290 at 296.310 kb on + strand, within SM_b20290 at 296.310 kb on + strand, within SM_b20290 at 296.359 kb on - strand, within SM_b20290 at 296.801 kb on - strand at 296.924 kb on + strand at 296.924 kb on + strand at 296.925 kb on - strand at 296.925 kb on - strand at 296.925 kb on - strand at 297.155 kb on + strand, within SM_b20291 at 297.156 kb on - strand, within SM_b20291 at 297.321 kb on + strand, within SM_b20291 at 297.321 kb on + strand, within SM_b20291 at 297.322 kb on - strand, within SM_b20291 at 297.337 kb on + strand, within SM_b20291 at 297.338 kb on - strand, within SM_b20291 at 297.404 kb on + strand, within SM_b20291 at 297.545 kb on - strand, within SM_b20291 at 297.611 kb on + strand, within SM_b20291 at 297.612 kb on - strand, within SM_b20291
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 294,937 + SM_b20289 0.52 -0.1 294,937 + SM_b20289 0.52 +0.2 294,937 + SM_b20289 0.52 +0.7 294,937 + SM_b20289 0.52 -1.4 294,937 + SM_b20289 0.52 -1.2 294,937 + SM_b20289 0.52 -0.1 294,938 - SM_b20289 0.52 +0.0 294,938 - SM_b20289 0.52 -1.8 294,939 + SM_b20289 0.52 -0.2 294,939 + SM_b20289 0.52 +0.2 294,939 + SM_b20289 0.52 -0.3 295,122 + SM_b20289 0.66 -0.6 295,122 + SM_b20289 0.66 +1.0 295,123 - SM_b20289 0.66 +1.0 295,139 + SM_b20289 0.67 +0.5 295,140 - SM_b20289 0.67 +0.2 295,185 + SM_b20289 0.71 -0.6 295,205 + SM_b20289 0.72 +0.5 295,224 + SM_b20289 0.73 -0.8 295,224 + SM_b20289 0.73 +0.3 295,224 + SM_b20289 0.73 -1.4 295,225 - SM_b20289 0.73 +0.9 295,225 - SM_b20289 0.73 -0.8 295,559 - +0.8 295,647 - +1.7 295,647 - -1.4 295,818 + -0.2 295,818 + -0.6 295,819 - +0.0 296,158 + SM_b20290 0.43 +1.7 296,310 + SM_b20290 0.58 +2.3 296,310 + SM_b20290 0.58 +0.6 296,359 - SM_b20290 0.63 +0.6 296,801 - +0.5 296,924 + +1.5 296,924 + +0.1 296,925 - -0.1 296,925 - -0.3 296,925 - +0.2 297,155 + SM_b20291 0.17 +0.7 297,156 - SM_b20291 0.17 -0.2 297,321 + SM_b20291 0.24 +2.6 297,321 + SM_b20291 0.24 +0.3 297,322 - SM_b20291 0.24 +1.5 297,337 + SM_b20291 0.24 +0.6 297,338 - SM_b20291 0.24 +0.5 297,404 + SM_b20291 0.27 -0.2 297,545 - SM_b20291 0.33 +0.1 297,611 + SM_b20291 0.35 +0.3 297,612 - SM_b20291 0.35 -1.3
Or see this region's nucleotide sequence