Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20286 and SM_b20287 are separated by 18 nucleotides SM_b20287 and SM_b20288 overlap by 4 nucleotides SM_b20288 and SM_b20289 are separated by 109 nucleotides
SM_b20286: SM_b20286 - hypothetical protein, at 290,921 to 292,000
_b20286
SM_b20287: SM_b20287 - hypothetical protein, at 292,019 to 292,726
_b20287
SM_b20288: SM_b20288 - hypothetical protein, at 292,723 to 294,123
_b20288
SM_b20289: SM_b20289 - permease, at 294,233 to 295,582
_b20289
Position (kb) 292
293
294
295 Strain fitness (log2 ratio) -2
-1
0
1
2 at 291.782 kb on + strand, within SM_b20286 at 291.782 kb on + strand, within SM_b20286 at 291.783 kb on - strand, within SM_b20286 at 291.788 kb on + strand, within SM_b20286 at 291.788 kb on + strand, within SM_b20286 at 291.788 kb on + strand, within SM_b20286 at 291.788 kb on + strand, within SM_b20286 at 291.789 kb on - strand, within SM_b20286 at 291.789 kb on - strand, within SM_b20286 at 291.789 kb on - strand, within SM_b20286 at 292.061 kb on - strand at 292.149 kb on + strand, within SM_b20287 at 292.164 kb on - strand, within SM_b20287 at 292.257 kb on - strand, within SM_b20287 at 292.278 kb on + strand, within SM_b20287 at 292.279 kb on - strand, within SM_b20287 at 292.639 kb on + strand, within SM_b20287 at 292.711 kb on + strand at 293.502 kb on + strand, within SM_b20288 at 293.502 kb on + strand, within SM_b20288 at 293.502 kb on + strand, within SM_b20288 at 293.502 kb on + strand, within SM_b20288 at 293.503 kb on - strand, within SM_b20288 at 293.503 kb on - strand, within SM_b20288 at 293.656 kb on + strand, within SM_b20288 at 293.657 kb on - strand, within SM_b20288 at 293.706 kb on + strand, within SM_b20288 at 293.706 kb on + strand, within SM_b20288 at 293.872 kb on + strand, within SM_b20288 at 293.907 kb on + strand, within SM_b20288 at 294.129 kb on + strand at 294.129 kb on + strand at 294.235 kb on - strand at 294.278 kb on + strand at 294.278 kb on + strand at 294.381 kb on + strand, within SM_b20289 at 294.382 kb on - strand, within SM_b20289 at 294.407 kb on + strand, within SM_b20289 at 294.679 kb on + strand, within SM_b20289 at 294.680 kb on - strand, within SM_b20289 at 294.937 kb on + strand, within SM_b20289 at 294.937 kb on + strand, within SM_b20289 at 294.937 kb on + strand, within SM_b20289 at 294.937 kb on + strand, within SM_b20289 at 294.937 kb on + strand, within SM_b20289 at 294.937 kb on + strand, within SM_b20289 at 294.938 kb on - strand, within SM_b20289 at 294.938 kb on - strand, within SM_b20289 at 294.939 kb on + strand, within SM_b20289 at 294.939 kb on + strand, within SM_b20289 at 294.939 kb on + strand, within SM_b20289 at 295.122 kb on + strand, within SM_b20289 at 295.122 kb on + strand, within SM_b20289 at 295.123 kb on - strand, within SM_b20289
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 291,782 + SM_b20286 0.80 +0.5 291,782 + SM_b20286 0.80 +1.3 291,783 - SM_b20286 0.80 -0.2 291,788 + SM_b20286 0.80 +0.1 291,788 + SM_b20286 0.80 -0.7 291,788 + SM_b20286 0.80 -0.4 291,788 + SM_b20286 0.80 -0.4 291,789 - SM_b20286 0.80 +0.0 291,789 - SM_b20286 0.80 -0.6 291,789 - SM_b20286 0.80 -0.3 292,061 - -0.0 292,149 + SM_b20287 0.18 +0.5 292,164 - SM_b20287 0.20 -0.4 292,257 - SM_b20287 0.34 -0.6 292,278 + SM_b20287 0.37 +1.5 292,279 - SM_b20287 0.37 -0.2 292,639 + SM_b20287 0.88 -0.2 292,711 + -1.4 293,502 + SM_b20288 0.56 +0.5 293,502 + SM_b20288 0.56 -0.5 293,502 + SM_b20288 0.56 +0.3 293,502 + SM_b20288 0.56 +2.0 293,503 - SM_b20288 0.56 -0.8 293,503 - SM_b20288 0.56 +0.0 293,656 + SM_b20288 0.67 +0.3 293,657 - SM_b20288 0.67 +1.3 293,706 + SM_b20288 0.70 +1.0 293,706 + SM_b20288 0.70 +0.7 293,872 + SM_b20288 0.82 +0.3 293,907 + SM_b20288 0.85 -0.2 294,129 + -0.6 294,129 + -0.4 294,235 - -0.2 294,278 + -0.7 294,278 + +0.4 294,381 + SM_b20289 0.11 -0.9 294,382 - SM_b20289 0.11 -1.2 294,407 + SM_b20289 0.13 -1.3 294,679 + SM_b20289 0.33 -1.1 294,680 - SM_b20289 0.33 -0.1 294,937 + SM_b20289 0.52 -0.1 294,937 + SM_b20289 0.52 +0.2 294,937 + SM_b20289 0.52 +0.7 294,937 + SM_b20289 0.52 -1.4 294,937 + SM_b20289 0.52 -1.2 294,937 + SM_b20289 0.52 -0.1 294,938 - SM_b20289 0.52 +0.0 294,938 - SM_b20289 0.52 -1.8 294,939 + SM_b20289 0.52 -0.2 294,939 + SM_b20289 0.52 +0.2 294,939 + SM_b20289 0.52 -0.3 295,122 + SM_b20289 0.66 -0.6 295,122 + SM_b20289 0.66 +1.0 295,123 - SM_b20289 0.66 +1.0
Or see this region's nucleotide sequence