Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20265 and SM_b20266 overlap by 8 nucleotides SM_b20266 and SM_b20267 are separated by 0 nucleotides SM_b20267 and SM_b20268 are separated by 14 nucleotides
SM_b20265: SM_b20265 - amino acid ABC transporter permease, at 270,069 to 270,722
_b20265
SM_b20266: SM_b20266 - amino acid ABC transporter ATP-binding protein, at 270,715 to 271,437
_b20266
SM_b20267: SM_b20267 - D-amino acid dehydrogenase, at 271,438 to 272,679
_b20267
SM_b20268: SM_b20268 - hydroxyproline-2-epimerase, at 272,694 to 273,695
_b20268
Position (kb) 271
272
273 Strain fitness (log2 ratio) -2
-1
0
1
2 at 270.514 kb on + strand, within SM_b20265 at 270.515 kb on - strand, within SM_b20265 at 270.596 kb on - strand, within SM_b20265 at 270.596 kb on - strand, within SM_b20265 at 270.651 kb on + strand, within SM_b20265 at 270.652 kb on - strand, within SM_b20265 at 270.652 kb on - strand, within SM_b20265 at 271.183 kb on + strand, within SM_b20266 at 271.183 kb on + strand, within SM_b20266 at 271.184 kb on - strand, within SM_b20266 at 271.185 kb on + strand, within SM_b20266 at 271.185 kb on + strand, within SM_b20266 at 271.185 kb on + strand, within SM_b20266 at 271.185 kb on + strand, within SM_b20266 at 271.186 kb on - strand, within SM_b20266 at 271.186 kb on - strand, within SM_b20266 at 271.186 kb on - strand, within SM_b20266 at 271.186 kb on - strand, within SM_b20266 at 271.186 kb on - strand, within SM_b20266 at 271.186 kb on - strand, within SM_b20266 at 271.435 kb on + strand at 271.596 kb on + strand, within SM_b20267 at 271.864 kb on + strand, within SM_b20267 at 272.001 kb on + strand, within SM_b20267 at 272.045 kb on - strand, within SM_b20267 at 272.266 kb on - strand, within SM_b20267 at 272.936 kb on - strand, within SM_b20268 at 273.075 kb on + strand, within SM_b20268 at 273.075 kb on + strand, within SM_b20268 at 273.076 kb on - strand, within SM_b20268 at 273.076 kb on - strand, within SM_b20268 at 273.196 kb on - strand, within SM_b20268 at 273.257 kb on + strand, within SM_b20268
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 270,514 + SM_b20265 0.68 -0.4 270,515 - SM_b20265 0.68 +2.1 270,596 - SM_b20265 0.81 +1.1 270,596 - SM_b20265 0.81 +1.0 270,651 + SM_b20265 0.89 +0.7 270,652 - SM_b20265 0.89 +1.3 270,652 - SM_b20265 0.89 +0.3 271,183 + SM_b20266 0.65 +0.3 271,183 + SM_b20266 0.65 -0.7 271,184 - SM_b20266 0.65 +0.8 271,185 + SM_b20266 0.65 -0.1 271,185 + SM_b20266 0.65 -0.1 271,185 + SM_b20266 0.65 +2.5 271,185 + SM_b20266 0.65 -0.3 271,186 - SM_b20266 0.65 +0.3 271,186 - SM_b20266 0.65 +0.7 271,186 - SM_b20266 0.65 +0.2 271,186 - SM_b20266 0.65 -2.1 271,186 - SM_b20266 0.65 -0.1 271,186 - SM_b20266 0.65 +1.2 271,435 + +0.4 271,596 + SM_b20267 0.13 +0.8 271,864 + SM_b20267 0.34 -1.1 272,001 + SM_b20267 0.45 +0.7 272,045 - SM_b20267 0.49 +0.7 272,266 - SM_b20267 0.67 +0.5 272,936 - SM_b20268 0.24 +1.3 273,075 + SM_b20268 0.38 -0.8 273,075 + SM_b20268 0.38 +0.0 273,076 - SM_b20268 0.38 +0.4 273,076 - SM_b20268 0.38 +0.0 273,196 - SM_b20268 0.50 +0.5 273,257 + SM_b20268 0.56 +0.2
Or see this region's nucleotide sequence