Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20263 and SM_b20264 are separated by 66 nucleotides SM_b20264 and SM_b20265 are separated by 12 nucleotides SM_b20265 and SM_b20266 overlap by 8 nucleotides SM_b20266 and SM_b20267 are separated by 0 nucleotides
SM_b20263: SM_b20263 - amino acid ABC transporter substrate-binding protein, at 268,518 to 269,324
_b20263
SM_b20264: SM_b20264 - amino acid ABC transporter permease, at 269,391 to 270,056
_b20264
SM_b20265: SM_b20265 - amino acid ABC transporter permease, at 270,069 to 270,722
_b20265
SM_b20266: SM_b20266 - amino acid ABC transporter ATP-binding protein, at 270,715 to 271,437
_b20266
SM_b20267: SM_b20267 - D-amino acid dehydrogenase, at 271,438 to 272,679
_b20267
Position (kb) 270
271 Strain fitness (log2 ratio) -2
-1
0
1
2 at 269.081 kb on + strand at 269.196 kb on + strand, within SM_b20263 at 269.400 kb on + strand at 269.400 kb on + strand at 269.400 kb on + strand at 269.401 kb on - strand at 269.614 kb on - strand, within SM_b20264 at 269.614 kb on - strand, within SM_b20264 at 269.661 kb on + strand, within SM_b20264 at 269.661 kb on + strand, within SM_b20264 at 269.663 kb on + strand, within SM_b20264 at 269.663 kb on + strand, within SM_b20264 at 269.664 kb on - strand, within SM_b20264 at 269.704 kb on - strand, within SM_b20264 at 269.704 kb on - strand, within SM_b20264 at 269.988 kb on + strand, within SM_b20264 at 269.988 kb on + strand, within SM_b20264 at 269.989 kb on - strand, within SM_b20264 at 269.991 kb on + strand at 269.992 kb on - strand at 270.214 kb on - strand, within SM_b20265 at 270.358 kb on - strand, within SM_b20265 at 270.514 kb on + strand, within SM_b20265 at 270.515 kb on - strand, within SM_b20265 at 270.596 kb on - strand, within SM_b20265 at 270.596 kb on - strand, within SM_b20265 at 270.651 kb on + strand, within SM_b20265 at 270.652 kb on - strand, within SM_b20265 at 270.652 kb on - strand, within SM_b20265 at 271.183 kb on + strand, within SM_b20266 at 271.183 kb on + strand, within SM_b20266 at 271.184 kb on - strand, within SM_b20266 at 271.185 kb on + strand, within SM_b20266 at 271.185 kb on + strand, within SM_b20266 at 271.185 kb on + strand, within SM_b20266 at 271.185 kb on + strand, within SM_b20266 at 271.186 kb on - strand, within SM_b20266 at 271.186 kb on - strand, within SM_b20266 at 271.186 kb on - strand, within SM_b20266 at 271.186 kb on - strand, within SM_b20266 at 271.186 kb on - strand, within SM_b20266 at 271.186 kb on - strand, within SM_b20266 at 271.435 kb on + strand at 271.596 kb on + strand, within SM_b20267
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 269,081 + +0.3 269,196 + SM_b20263 0.84 -0.3 269,400 + +0.6 269,400 + -0.4 269,400 + +0.2 269,401 - +0.3 269,614 - SM_b20264 0.33 +0.5 269,614 - SM_b20264 0.33 +0.9 269,661 + SM_b20264 0.41 -0.5 269,661 + SM_b20264 0.41 -0.2 269,663 + SM_b20264 0.41 +0.5 269,663 + SM_b20264 0.41 -0.1 269,664 - SM_b20264 0.41 +0.1 269,704 - SM_b20264 0.47 +0.4 269,704 - SM_b20264 0.47 +0.3 269,988 + SM_b20264 0.90 -0.3 269,988 + SM_b20264 0.90 +0.2 269,989 - SM_b20264 0.90 +1.5 269,991 + -0.1 269,992 - -0.7 270,214 - SM_b20265 0.22 +0.0 270,358 - SM_b20265 0.44 +0.8 270,514 + SM_b20265 0.68 -0.4 270,515 - SM_b20265 0.68 +2.1 270,596 - SM_b20265 0.81 +1.1 270,596 - SM_b20265 0.81 +1.0 270,651 + SM_b20265 0.89 +0.7 270,652 - SM_b20265 0.89 +1.3 270,652 - SM_b20265 0.89 +0.3 271,183 + SM_b20266 0.65 +0.3 271,183 + SM_b20266 0.65 -0.7 271,184 - SM_b20266 0.65 +0.8 271,185 + SM_b20266 0.65 -0.1 271,185 + SM_b20266 0.65 -0.1 271,185 + SM_b20266 0.65 +2.5 271,185 + SM_b20266 0.65 -0.3 271,186 - SM_b20266 0.65 +0.3 271,186 - SM_b20266 0.65 +0.7 271,186 - SM_b20266 0.65 +0.2 271,186 - SM_b20266 0.65 -2.1 271,186 - SM_b20266 0.65 -0.1 271,186 - SM_b20266 0.65 +1.2 271,435 + +0.4 271,596 + SM_b20267 0.13 +0.8
Or see this region's nucleotide sequence