Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20257 and SM_b20258 are separated by 104 nucleotides SM_b20258 and SM_b20259 are separated by 120 nucleotides
SM_b20257: SM_b20257 - adenylate cyclase, at 262,074 to 263,132
_b20257
SM_b20258: SM_b20258 - transcriptional regulator, at 263,237 to 263,947
_b20258
SM_b20259: SM_b20259 - dihydrodipicolinate synthase, at 264,068 to 265,030
_b20259
Position (kb) 263
264 Strain fitness (log2 ratio) -1
0
1
2 at 262.600 kb on - strand, within SM_b20257 at 262.699 kb on + strand, within SM_b20257 at 262.700 kb on - strand, within SM_b20257 at 262.807 kb on + strand, within SM_b20257 at 262.807 kb on + strand, within SM_b20257 at 262.808 kb on - strand, within SM_b20257 at 263.114 kb on + strand at 263.306 kb on + strand at 263.306 kb on + strand at 263.534 kb on + strand, within SM_b20258 at 263.713 kb on - strand, within SM_b20258 at 263.713 kb on - strand, within SM_b20258 at 263.762 kb on + strand, within SM_b20258 at 263.775 kb on - strand, within SM_b20258 at 263.775 kb on - strand, within SM_b20258 at 263.775 kb on - strand, within SM_b20258 at 264.200 kb on + strand, within SM_b20259 at 264.270 kb on + strand, within SM_b20259 at 264.271 kb on - strand, within SM_b20259 at 264.376 kb on - strand, within SM_b20259 at 264.376 kb on - strand, within SM_b20259 at 264.439 kb on - strand, within SM_b20259 at 264.439 kb on - strand, within SM_b20259 at 264.473 kb on + strand, within SM_b20259 at 264.474 kb on - strand, within SM_b20259 at 264.474 kb on - strand, within SM_b20259 at 264.485 kb on + strand, within SM_b20259 at 264.486 kb on - strand, within SM_b20259 at 264.486 kb on - strand, within SM_b20259 at 264.486 kb on - strand, within SM_b20259 at 264.488 kb on + strand, within SM_b20259 at 264.711 kb on + strand, within SM_b20259 at 264.854 kb on + strand, within SM_b20259
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 262,600 - SM_b20257 0.50 -0.6 262,699 + SM_b20257 0.59 +0.8 262,700 - SM_b20257 0.59 +0.5 262,807 + SM_b20257 0.69 +0.4 262,807 + SM_b20257 0.69 +0.8 262,808 - SM_b20257 0.69 +1.7 263,114 + -0.3 263,306 + -0.6 263,306 + -0.7 263,534 + SM_b20258 0.42 -1.0 263,713 - SM_b20258 0.67 -1.4 263,713 - SM_b20258 0.67 -1.6 263,762 + SM_b20258 0.74 +0.2 263,775 - SM_b20258 0.76 -0.1 263,775 - SM_b20258 0.76 -0.2 263,775 - SM_b20258 0.76 -1.0 264,200 + SM_b20259 0.14 +0.2 264,270 + SM_b20259 0.21 +0.3 264,271 - SM_b20259 0.21 +0.1 264,376 - SM_b20259 0.32 -0.6 264,376 - SM_b20259 0.32 +0.7 264,439 - SM_b20259 0.39 +0.6 264,439 - SM_b20259 0.39 +0.4 264,473 + SM_b20259 0.42 -0.1 264,474 - SM_b20259 0.42 +0.2 264,474 - SM_b20259 0.42 +0.6 264,485 + SM_b20259 0.43 +1.3 264,486 - SM_b20259 0.43 -1.3 264,486 - SM_b20259 0.43 +2.1 264,486 - SM_b20259 0.43 -0.6 264,488 + SM_b20259 0.44 +2.0 264,711 + SM_b20259 0.67 +0.6 264,854 + SM_b20259 0.82 +0.2
Or see this region's nucleotide sequence